JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMNDC1_chr10_110285730_110309920	0/0	t0009	3592	3	3	0	0	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0010	3595	3	1	1	0	0	1	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0011	3594	3	2	0	1	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0012	3595	2	2	0	0	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0013	3595	2	0	0	0	0	2	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0014	3595	2	2	0	0	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0015	3594	2	2	0	0	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0016	3595	2	2	0	0	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0017	3595	2	2	0	0	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0018	3595	1	0	0	1	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0019	3595	1	0	0	1	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0020	3595	1	0	0	1	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0021	3595	1	0	1	0	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0022	3595	1	0	0	1	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0023	3594	1	0	0	0	1	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0024	3594	1	0	0	1	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0025	3594	1	0	0	1	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0026	3594	1	1	0	0	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0027	3595	1	0	1	0	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0028	3596	1	0	0	1	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0029	3595	1	1	0	0	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0030	3594	1	1	0	0	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0031	3595	1	1	0	0	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0032	3595	1	1	0	0	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMNDC1_chr10_110285730_110309920	0/0	t0033	3595	1	1	0	0	0	0	copy fasta	SMNDC1	chr10	110285730	110309920
SMOC1_chr14_69874416_70037366	1/1	t0001	2372	146	55	36	32	7	14	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0002	2372	44	0	10	29	2	3	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0003	2372	13	4	0	7	2	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0004	2372	8	0	0	4	1	3	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0005	2372	8	4	1	0	0	3	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0006	2372	7	1	1	0	2	3	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0007	2372	6	6	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0008	2372	4	4	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0009	2372	3	2	1	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0010	2372	2	1	1	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0011	2372	2	1	1	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0012	2372	2	0	2	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0013	2372	2	0	1	0	0	1	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0014	2372	2	1	1	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0015	2372	2	2	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0016	2372	1	1	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0017	2372	1	0	1	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0018	2372	1	0	1	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0019	2372	1	1	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0020	2372	1	1	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0021	2372	1	1	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0022	2372	1	1	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0023	2372	1	1	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0024	2372	1	0	0	1	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0025	2372	1	0	0	1	0	0	copy fasta	SMOC1	chr14	69874416	70037366