JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMOC1_chr14_69874416_70037366	0/0	t0026	2372	1	1	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0027	2372	1	1	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0028	2372	1	0	0	1	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0029	2372	1	0	0	1	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0030	2372	1	0	0	0	0	1	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0031	2372	1	1	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0032	2372	1	0	1	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0033	2372	1	1	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC1_chr14_69874416_70037366	0/0	t0034	2372	1	1	0	0	0	0	copy fasta	SMOC1	chr14	69874416	70037366
SMOC2_chr6_168436184_168672992	1/0	t0001	1742	84	19	9	40	3	12	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	t0002	1742	57	19	10	24	1	3	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/1	t0003	1742	13	1	4	0	2	5	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	t0004	1742	6	0	4	0	2	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	t0005	1742	5	4	1	0	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	t0006	1742	3	3	0	0	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	t0007	1742	2	1	1	0	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	t0008	1742	2	1	0	0	0	1	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	t0009	1742	1	0	1	0	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	t0010	1742	1	1	0	0	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	t0011	1742	1	0	0	0	0	1	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	t0012	1742	1	0	0	1	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	t0013	1742	1	0	0	0	0	1	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	t0014	1742	1	1	0	0	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	t0015	1742	1	0	0	1	0	0	copy fasta	SMOC2	chr6	168436184	168672992
SMOC2_chr6_168436184_168672992	0/0	t0016	1742	1	0	0	0	0	1	copy fasta	SMOC2	chr6	168436184	168672992
SMOX_chr20_4143828_4192727	1/1	t0001	497	414	85	72	187	18	50	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	t0002	496	8	8	0	0	0	0	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	t0003	497	2	2	0	0	0	0	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	t0004	497	2	0	0	2	0	0	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	t0005	496	1	1	0	0	0	0	copy fasta	SMOX	chr20	4143828	4192727
SMOX_chr20_4143828_4192727	0/0	t0006	497	1	0	0	1	0	0	copy fasta	SMOX	chr20	4143828	4192727
SMO_chr7_129183633_129218545	0/1	t0001	1614	263	47	54	117	12	32	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0002	1614	62	13	8	27	2	12	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0003	1614	17	15	2	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	1/0	t0004	1614	12	10	1	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0005	1614	8	0	1	7	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0006	1614	6	6	0	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0007	1614	5	0	0	5	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0008	1614	4	0	0	4	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0009	1614	3	0	3	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0010	1614	3	2	1	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0011	1614	3	0	0	3	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0012	1614	3	0	3	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0013	1614	2	0	2	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0014	1614	2	0	0	2	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0015	1614	2	0	0	2	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0016	1614	1	0	0	1	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0017	1614	1	1	0	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0018	1614	1	0	0	1	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0019	1614	1	0	1	0	0	0	copy fasta	SMO	chr7	129183633	129218545