Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BEND4_chr4_42105853_42157655	0/0	t0014	7024	2	2	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0015	7024	2	2	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0016	7024	2	2	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0017	7030	2	2	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0018	7023	1	0	0	1	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0019	7023	1	0	0	1	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0020	7023	1	0	1	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0021	7023	1	0	0	0	0	1	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0022	7010	1	0	1	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0023	7023	1	0	0	1	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0024	7024	1	0	0	0	0	1	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0025	7024	1	1	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0026	7024	1	1	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0027	7024	1	1	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0028	7024	1	1	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0029	7024	1	0	1	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0030	7030	1	1	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0031	7023	1	0	1	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	t0032	7024	1	0	0	0	1	0	copy fasta	BEND4	chr4	42105853	42157655
BEND5_chr1_48722519_48781891	0/1	t0001	428	242	43	47	108	11	32	copy fasta	BEND5	chr1	48722519	48781891
BEND5_chr1_48722519_48781891	1/0	t0002	428	99	37	15	41	1	4	copy fasta	BEND5	chr1	48722519	48781891
BEND5_chr1_48722519_48781891	0/0	t0003	428	1	0	0	1	0	0	copy fasta	BEND5	chr1	48722519	48781891
BEND6_chr6_56950107_57032346	0/1	t0001	1729	112	31	23	45	3	9	copy fasta	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	1/0	t0002	1729	59	28	8	21	0	1	copy fasta	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	t0003	1729	13	4	5	0	1	3	copy fasta	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	t0004	1729	11	1	0	10	0	0	copy fasta	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	t0005	1729	4	0	0	4	0	0	copy fasta	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	t0006	1729	2	0	1	0	0	1	copy fasta	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	t0007	1729	1	1	0	0	0	0	copy fasta	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	t0008	1729	1	0	1	0	0	0	copy fasta	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	t0009	1729	1	1	0	0	0	0	copy fasta	BEND6	chr6	56950107	57032346
BEND7_chr10_13436088_13534014	0/1	t0001	1122	228	58	61	83	9	16	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	t0002	1131	28	8	5	7	1	7	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	t0003	1122	13	0	0	4	0	9	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	t0004	1123	8	8	0	0	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	t0005	1125	6	6	0	0	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	t0006	1122	4	0	0	3	0	1	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	t0007	1137	3	3	0	0	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	t0008	1132	2	2	0	0	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	1/0	t0009	1137	2	0	1	0	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	t0010	1125	1	1	0	0	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	t0011	1122	1	1	0	0	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	t0012	1122	1	0	0	0	0	1	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	t0013	1122	1	0	1	0	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	t0014	1122	1	1	0	0	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	t0015	1122	1	0	0	1	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEST1_chr11_61945351_61969461	1/1	t0001	453	400	92	71	170	18	47	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	t0002	453	6	6	0	0	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	t0003	453	4	0	3	0	0	1	copy fasta	BEST1	chr11	61945351	61969461
BEST2_chr19_12746791_12763458	1/1	t0001	482	375	82	73	158	18	42	copy fasta	BEST2	chr19	12746791	12763458