JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMO_chr7_129183633_129218545	0/0	t0020	1614	1	0	0	1	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0021	1614	1	0	0	1	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0022	1614	1	0	0	1	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0023	1614	1	0	0	1	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0024	1614	1	0	0	1	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0025	1614	1	1	0	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0026	1614	1	1	0	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0027	1614	1	1	0	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0028	1614	1	1	0	0	0	0	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0029	1614	1	0	0	0	0	1	copy fasta	SMO	chr7	129183633	129218545
SMO_chr7_129183633_129218545	0/0	t0030	1614	1	0	0	0	0	1	copy fasta	SMO	chr7	129183633	129218545
SMPD1_chr11_6385474_6399996	1/1	t0001	515	346	71	72	143	13	45	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	t0002	515	23	9	8	0	3	3	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	t0003	515	10	7	3	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	t0004	515	5	4	1	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	t0005	515	3	3	0	0	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD1_chr11_6385474_6399996	0/0	t0006	515	1	0	0	1	0	0	copy fasta	SMPD1	chr11	6385474	6399996
SMPD2_chr6_109435724_109448919	1/1	t0001	413	247	68	46	103	9	19	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	t0002	413	157	14	23	92	6	22	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	t0003	413	19	0	7	9	1	2	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	t0004	413	6	6	0	0	0	0	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	t0005	413	3	3	0	0	0	0	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	t0006	413	3	0	0	0	0	3	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	t0007	413	2	0	2	0	0	0	copy fasta	SMPD2	chr6	109435724	109448919
SMPD2_chr6_109435724_109448919	0/0	t0008	413	1	1	0	0	0	0	copy fasta	SMPD2	chr6	109435724	109448919
SMPD3_chr16_68353327_68453508	0/1	t0001	3300	75	12	20	27	5	10	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0002	3304	33	1	9	14	2	7	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0003	3304	23	12	4	5	0	2	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0004	3300	9	7	0	0	0	2	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0005	3300	8	8	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0006	3304	7	6	1	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0007	3300	6	6	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0008	3304	5	5	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0009	3304	3	3	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0010	3297	3	0	2	0	0	1	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0011	3304	2	0	2	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0012	3300	2	2	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0013	3304	2	2	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0014	3304	2	1	1	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0015	3300	2	0	1	0	1	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0016	3300	2	2	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0017	3300	2	2	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0018	3300	2	2	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0019	3300	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0020	3300	1	0	0	1	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0021	3300	1	0	0	1	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0022	3304	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0023	3304	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0024	3304	1	0	1	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0025	3304	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508