JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMPD3_chr16_68353327_68453508	0/0	t0026	3304	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0027	3304	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0028	3304	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	1/0	t0029	3304	1	0	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0030	3304	1	0	0	1	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0031	3300	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0032	3304	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0033	3304	1	0	0	0	0	1	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0034	3300	1	0	0	1	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0035	3281	1	0	1	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0036	3304	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0037	3304	1	0	0	0	0	1	copy fasta	SMPD3	chr16	68353327	68453508
SMPD3_chr16_68353327_68453508	0/0	t0038	3300	1	1	0	0	0	0	copy fasta	SMPD3	chr16	68353327	68453508
SMPD4_chr2_130146408_130186602	1/1	t0001	1266	141	26	25	60	3	25	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	t0002	1266	136	31	29	58	7	11	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	t0003	1266	35	34	1	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	t0004	1266	3	0	3	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	t0005	1266	3	0	0	3	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	t0006	1266	3	2	1	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	t0007	1266	2	0	0	2	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	t0008	1266	1	0	1	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	t0009	1266	1	1	0	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	t0010	1266	1	0	0	1	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	t0011	1266	1	0	0	0	1	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	t0012	1266	1	0	1	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	t0013	1309	1	0	0	0	1	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	t0014	1266	1	1	0	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	t0015	1266	1	1	0	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPD4_chr2_130146408_130186602	0/0	t0016	1266	1	0	1	0	0	0	copy fasta	SMPD4	chr2	130146408	130186602
SMPDL3A_chr6_122784258_122814720	1/1	t0001	402	216	35	49	106	8	16	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	t0002	402	164	21	16	94	5	28	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	t0003	401	34	25	6	1	2	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	t0004	401	13	0	10	1	1	1	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	t0005	401	7	7	0	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	t0006	402	4	0	4	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	t0007	402	1	0	1	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	t0008	401	1	1	0	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	t0009	402	1	1	0	0	0	0	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3A_chr6_122784258_122814720	0/0	t0010	402	1	0	0	0	0	1	copy fasta	SMPDL3A	chr6	122784258	122814720
SMPDL3B_chr1_27930000_27964152	0/0	t0001	499	293	49	45	163	11	25	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/1	t0002	500	71	3	24	25	4	14	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	t0003	500	43	27	8	2	2	4	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	1/0	t0004	499	15	12	2	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	t0005	500	2	2	0	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	t0006	499	2	0	0	2	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	t0007	500	1	0	0	0	0	1	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	t0008	499	1	0	0	0	1	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	t0009	499	1	1	0	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	t0010	500	1	0	1	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPDL3B_chr1_27930000_27964152	0/0	t0011	500	1	1	0	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152