JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMPDL3B_chr1_27930000_27964152	0/0	t0012	500	1	1	0	0	0	0	copy fasta	SMPDL3B	chr1	27930000	27964152
SMPX_chrX_21700978_21763116	1/1	t0001	619	288	76	50	120	11	29	copy fasta	SMPX	chrX	21700978	21763116
SMPX_chrX_21700978_21763116	0/0	t0002	619	1	0	0	0	0	1	copy fasta	SMPX	chrX	21700978	21763116
SMR3A_chr4_70355760_70372158	1/1	t0001	262	277	52	50	140	8	25	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	t0002	262	133	11	16	84	6	16	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	t0003	262	43	35	7	0	0	1	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	t0004	262	2	2	0	0	0	0	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	t0005	262	1	0	0	1	0	0	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	t0006	289	1	0	1	0	0	0	copy fasta	SMR3A	chr4	70355760	70372158
SMR3A_chr4_70355760_70372158	0/0	t0007	84	1	0	0	1	0	0	copy fasta	SMR3A	chr4	70355760	70372158
SMR3B_chr4_70378131_70395244	0/1	t0001	493	290	58	61	133	10	27	copy fasta	SMR3B	chr4	70378131	70395244
SMR3B_chr4_70378131_70395244	0/0	t0002	493	127	10	12	84	5	16	copy fasta	SMR3B	chr4	70378131	70395244
SMR3B_chr4_70378131_70395244	1/0	t0003	493	16	11	3	0	0	1	copy fasta	SMR3B	chr4	70378131	70395244
SMR3B_chr4_70378131_70395244	0/0	t0004	493	9	9	0	0	0	0	copy fasta	SMR3B	chr4	70378131	70395244
SMR3B_chr4_70378131_70395244	0/0	t0005	493	7	7	0	0	0	0	copy fasta	SMR3B	chr4	70378131	70395244
SMR3B_chr4_70378131_70395244	0/0	t0006	493	6	0	1	0	1	4	copy fasta	SMR3B	chr4	70378131	70395244
SMR3B_chr4_70378131_70395244	0/0	t0007	493	3	2	0	1	0	0	copy fasta	SMR3B	chr4	70378131	70395244
SMR3B_chr4_70378131_70395244	0/0	t0008	493	2	2	0	0	0	0	copy fasta	SMR3B	chr4	70378131	70395244
SMR3B_chr4_70378131_70395244	0/0	t0009	493	1	1	0	0	0	0	copy fasta	SMR3B	chr4	70378131	70395244
SMR3B_chr4_70378131_70395244	0/0	t0010	493	1	0	1	0	0	0	copy fasta	SMR3B	chr4	70378131	70395244
SMS_chrX_21935709_21999837	1/1	t0001	603	129	8	24	75	6	14	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	t0002	603	69	21	7	28	3	10	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	t0003	602	40	27	8	1	1	3	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	t0004	602	24	12	5	3	2	2	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	t0005	603	17	2	2	12	0	1	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	t0006	603	7	3	0	3	1	0	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	t0007	604	4	0	1	3	0	0	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	t0008	602	1	0	0	1	0	0	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	t0009	602	1	0	0	1	0	0	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	t0010	604	1	0	0	1	0	0	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	t0011	609	1	1	0	0	0	0	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	t0012	603	1	0	1	0	0	0	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	t0013	605	1	0	0	1	0	0	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	t0014	602	1	0	0	1	0	0	copy fasta	SMS	chrX	21935709	21999837
SMS_chrX_21935709_21999837	0/0	t0015	604	1	0	0	1	0	0	copy fasta	SMS	chrX	21935709	21999837
SMTNL1_chr11_57532595_57555272	1/1	t0001	211	339	82	74	139	13	29	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	t0002	211	19	5	3	9	1	1	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	t0003	211	4	3	1	0	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	t0004	211	2	0	0	2	0	0	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	t0005	211	1	0	0	0	0	1	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL1_chr11_57532595_57555272	0/0	t0006	211	1	0	0	0	0	1	copy fasta	SMTNL1	chr11	57532595	57555272
SMTNL2_chr17_4579529_4613319	1/1	t0001	910	280	67	52	128	6	25	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	t0002	911	133	15	31	58	10	19	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	t0003	910	10	9	1	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	t0004	910	3	2	1	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	t0005	913	3	0	0	3	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	t0006	910	2	0	0	2	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	t0007	910	2	2	0	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	t0008	910	1	1	0	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	t0009	910	1	1	0	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319