JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMTNL2_chr17_4579529_4613319	0/0	t0010	910	1	1	0	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	t0011	910	1	0	1	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	t0012	889	1	0	0	1	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	t0013	910	1	1	0	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	t0014	912	1	0	0	1	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	t0015	910	1	1	0	0	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTNL2_chr17_4579529_4613319	0/0	t0016	910	1	0	0	1	0	0	copy fasta	SMTNL2	chr17	4579529	4613319
SMTN_chr22_31076318_31109624	1/1	t0001	549	190	52	35	83	9	9	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	t0002	549	80	4	12	53	0	11	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	t0003	549	76	22	22	4	5	23	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	t0004	549	6	6	0	0	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	t0005	549	2	0	0	0	0	2	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	t0006	549	2	2	0	0	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	t0007	549	2	0	0	2	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	t0008	549	1	0	1	0	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	t0009	549	1	0	0	0	0	1	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	t0010	549	1	0	0	1	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMTN_chr22_31076318_31109624	0/0	t0011	549	1	0	0	1	0	0	copy fasta	SMTN	chr22	31076318	31109624
SMU1_chr9_33036765_33081674	0/0	t0001	5594	61	19	12	19	0	11	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0002	5586	49	14	13	14	4	4	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0003	5594	40	4	0	31	0	5	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0004	5593	40	1	7	28	0	4	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0005	5587	28	1	3	24	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0006	5597	21	0	9	11	0	1	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	1/0	t0007	5595	19	6	2	9	0	1	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0008	5587	9	2	5	2	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0009	5591	8	8	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0010	5594	7	7	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0011	5589	6	0	0	6	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0012	5594	6	0	4	0	1	1	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0013	5591	6	3	1	2	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0014	5599	6	0	0	5	0	1	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0015	5593	5	0	0	5	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0016	5595	4	1	0	2	0	1	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0017	5593	4	0	0	4	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0018	5596	3	0	0	3	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0019	5596	3	3	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0020	5587	3	2	1	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0021	5598	3	0	0	3	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0022	5588	3	0	0	3	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0023	5599	3	3	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0024	5594	2	0	0	0	0	2	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0025	5593	2	0	0	2	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0026	5594	2	0	0	2	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0027	5592	2	0	1	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0028	5593	2	0	1	0	0	1	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0029	5594	2	0	2	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0030	5593	2	0	2	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0031	5596	2	0	0	2	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0032	5594	2	0	0	2	0	0	copy fasta	SMU1	chr9	33036765	33081674