JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMU1_chr9_33036765_33081674	0/0	t0033	5595	2	0	2	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0034	5586	2	1	1	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0035	5588	2	1	1	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0036	5596	2	2	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0037	5598	2	0	0	2	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0038	5588	2	0	0	2	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0039	5594	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0040	5593	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0041	5588	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0042	5593	1	0	1	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0043	5594	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0044	5594	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0045	5595	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0046	5589	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0047	5594	1	0	0	0	0	1	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0048	5596	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0049	5595	1	0	0	0	0	1	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0050	5594	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0051	5591	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0052	5593	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0053	5592	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0054	5592	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0055	5592	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0056	5592	1	0	0	0	1	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0057	5594	1	0	1	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/1	t0058	5592	1	0	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0059	5594	1	0	0	0	0	1	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0060	5593	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0061	5594	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0062	5594	1	0	0	0	1	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0063	5595	1	1	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0064	5590	1	1	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0065	5596	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0066	5586	1	0	0	0	1	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0067	5588	1	0	1	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0068	5585	1	0	1	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0069	5589	1	1	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0070	5596	1	0	1	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0071	5596	1	1	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0072	5595	1	1	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0073	5596	1	0	1	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0074	5591	1	1	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0075	5592	1	1	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0076	5587	1	1	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0077	5597	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0078	5597	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0079	5598	1	0	1	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0080	5597	1	0	1	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0081	5587	1	0	1	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0082	5590	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674