JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMU1_chr9_33036765_33081674	0/0	t0083	5587	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0084	5588	1	1	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0085	5588	1	0	0	1	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0086	5589	1	0	0	0	0	1	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0087	5598	1	1	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0088	5599	1	1	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMU1_chr9_33036765_33081674	0/0	t0089	5599	1	1	0	0	0	0	copy fasta	SMU1	chr9	33036765	33081674
SMUG1_chr12_54175366_54193985	0/0	t0001	1869	139	6	38	70	9	16	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	1/0	t0002	1869	105	10	24	61	5	4	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0003	1870	41	6	2	31	0	2	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/1	t0004	1869	34	19	4	1	1	8	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0005	1870	29	12	0	11	0	6	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0006	1869	19	12	0	2	2	3	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0007	1869	11	0	0	7	0	4	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0008	1869	8	7	1	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0009	1868	7	7	0	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0010	1868	7	2	1	3	0	1	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0011	1869	7	3	0	4	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0012	1868	7	0	1	5	0	1	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0013	1869	3	3	0	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0014	1870	2	0	0	2	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0015	1869	2	0	2	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0016	1869	2	0	2	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0017	1869	2	0	1	1	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0018	1870	2	1	1	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0019	1869	1	1	0	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0020	1868	1	1	0	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0021	1870	1	1	0	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0022	1870	1	1	0	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0023	1869	1	0	0	0	0	1	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0024	1869	1	0	0	1	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0025	1869	1	0	1	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0026	1869	1	0	1	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0027	1869	1	0	0	0	1	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0028	1869	1	0	0	1	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMUG1_chr12_54175366_54193985	0/0	t0029	1869	1	0	1	0	0	0	copy fasta	SMUG1	chr12	54175366	54193985
SMURF1_chr7_99022440_99149108	1/0	t0001	3473	88	7	19	46	7	8	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/1	t0002	3461	36	1	12	10	2	10	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0003	3474	21	20	1	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0004	3474	21	0	5	12	4	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0005	3474	15	9	0	5	0	1	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0006	3474	10	9	1	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0007	3462	7	1	2	3	1	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0008	3473	6	0	1	4	0	1	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0009	3474	5	0	0	5	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0010	3462	5	1	3	1	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0011	3474	4	4	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0012	3473	3	3	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0013	3473	3	0	0	3	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0014	3462	3	0	1	0	1	1	copy fasta	SMURF1	chr7	99022440	99149108