JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMURF1_chr7_99022440_99149108	0/0	t0015	3462	3	2	1	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0016	3474	2	2	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0017	3474	2	2	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0018	3474	2	2	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0019	3474	2	2	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0020	3473	2	2	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0021	3474	1	1	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0022	3474	1	1	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0023	3473	1	1	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0024	3485	1	1	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0025	3474	1	1	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0026	3474	1	1	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0027	3474	1	1	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0028	3474	1	1	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0029	3474	1	1	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0030	3473	1	0	0	1	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0031	3473	1	0	1	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0032	3473	1	0	0	1	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0033	3473	1	0	1	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0034	3461	1	0	0	1	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0035	3462	1	1	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0036	3462	1	1	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0037	3462	1	1	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0038	3462	1	1	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0039	3462	1	0	1	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0040	3462	1	1	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0041	3461	1	0	1	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0042	3461	1	0	0	0	0	1	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0043	3461	1	0	0	0	1	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF1_chr7_99022440_99149108	0/0	t0044	3474	1	1	0	0	0	0	copy fasta	SMURF1	chr7	99022440	99149108
SMURF2_chr17_64537282_64667307	1/0	t0001	3994	34	6	12	8	2	5	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0002	3989	20	4	4	10	0	2	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/1	t0003	3993	18	2	5	4	1	5	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0004	3984	12	11	1	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0005	3992	7	2	3	1	1	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0006	3983	7	6	1	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0007	3992	6	6	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0008	3994	4	0	1	1	0	2	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0009	3992	4	0	0	0	0	4	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0010	3994	3	1	2	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0011	3992	3	1	2	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0012	3980	3	3	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0013	3992	2	2	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0014	3995	2	1	0	1	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0015	3993	2	2	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0016	3990	2	1	1	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0017	3991	2	1	1	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0018	3992	2	2	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0019	3990	2	1	1	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0020	3984	2	2	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307