JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMURF2_chr17_64537282_64667307	0/0	t0021	3990	2	2	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0022	3983	2	2	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0023	3983	2	2	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0024	3975	2	2	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0025	3986	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0026	3993	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0027	3990	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0028	3991	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0029	3993	1	0	1	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0030	3994	1	0	0	1	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0031	3994	1	0	1	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0032	3994	1	0	1	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0033	3994	1	0	0	1	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0034	3993	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0035	3993	1	0	1	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0036	3993	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0037	3989	1	0	0	1	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0038	3984	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0039	3991	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0040	3991	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0041	3990	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0042	3991	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0043	3992	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0044	3992	1	0	1	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0045	3992	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0046	3985	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0047	3985	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0048	3981	1	0	1	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0049	3983	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0050	3981	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0051	3977	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0052	3983	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMURF2_chr17_64537282_64667307	0/0	t0053	3992	1	1	0	0	0	0	copy fasta	SMURF2	chr17	64537282	64667307
SMYD1_chr2_88062825_88118384	0/0	t0001	2913	126	44	5	57	2	18	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0002	2913	99	21	30	31	8	9	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0003	2913	34	0	13	13	5	3	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	1/1	t0004	2913	32	8	12	9	0	1	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0005	2913	12	0	0	11	0	1	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0006	2914	6	6	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0007	2913	4	3	1	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0008	2913	3	0	0	3	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0009	2913	2	1	1	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0010	2914	2	2	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0011	2913	2	2	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0012	2913	2	2	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0013	2913	1	0	0	1	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0014	2913	1	0	1	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0015	2913	1	1	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0016	2913	1	0	0	0	0	1	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0017	2913	1	1	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384