JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMYD1_chr2_88062825_88118384	0/0	t0018	2913	1	0	0	0	1	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0019	2913	1	0	1	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0020	2913	1	0	0	0	0	1	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0021	2913	1	0	0	0	0	1	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0022	2913	1	1	0	0	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0023	2913	1	0	0	0	0	1	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0024	2913	1	0	0	1	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0025	2913	1	0	0	1	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD1_chr2_88062825_88118384	0/0	t0026	2913	1	0	0	1	0	0	copy fasta	SMYD1	chr2	88062825	88118384
SMYD2_chr1_214276159_214342131	1/1	t0001	444	240	65	47	83	12	31	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	t0002	440	125	20	19	77	2	7	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	t0003	444	9	7	2	0	0	0	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	t0004	444	3	3	0	0	0	0	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	t0005	444	1	0	0	0	0	1	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	t0006	444	1	0	0	0	0	1	copy fasta	SMYD2	chr1	214276159	214342131
SMYD2_chr1_214276159_214342131	0/0	t0007	444	1	1	0	0	0	0	copy fasta	SMYD2	chr1	214276159	214342131
SMYD3_chr1_245744347_246512279	0/0	t0001	279	95	42	22	23	1	7	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	t0002	279	53	14	12	21	1	5	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	t0003	279	1	1	0	0	0	0	copy fasta	SMYD3	chr1	245744347	246512279
SMYD3_chr1_245744347_246512279	0/0	t0004	279	1	1	0	0	0	0	copy fasta	SMYD3	chr1	245744347	246512279
SMYD4_chr17_1774485_1834902	0/0	t0001	1986	85	4	19	47	5	10	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/1	t0002	1991	77	10	20	29	7	10	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	1/0	t0003	1991	47	10	9	22	0	5	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0004	1991	39	5	8	20	2	4	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0005	2011	30	3	6	19	0	2	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0006	2011	13	6	0	7	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0007	2011	12	5	1	6	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0008	1991	10	10	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0009	1986	8	2	1	2	0	3	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0010	1990	6	6	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0011	1991	6	6	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0012	1987	5	0	0	5	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0013	2011	5	5	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0014	1990	4	4	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0015	1987	3	0	0	3	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0016	1986	3	1	1	1	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0017	1991	3	2	1	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0018	1986	3	0	0	3	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0019	1991	2	2	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0020	1985	2	2	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0021	1986	2	0	0	2	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0022	1991	2	2	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0023	1991	2	0	1	0	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0024	1990	2	2	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0025	1990	2	2	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0026	1991	2	0	0	2	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0027	1990	1	1	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0028	1991	1	1	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0029	1991	1	0	1	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	t0030	1986	1	0	0	1	0	0	copy fasta	SMYD4	chr17	1774485	1834902