Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BEST2_chr19_12746791_12763458	0/0	t0002	482	11	10	1	0	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	t0003	482	2	2	0	0	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	t0004	482	2	2	0	0	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST3_chr12_69648609_69704303	1/0	t0001	1413	232	60	35	111	10	15	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	t0002	1413	80	7	17	31	5	20	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	t0003	1413	15	8	2	0	0	5	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/1	t0004	1413	13	0	11	0	1	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	t0005	1413	5	5	0	0	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	t0006	1413	4	4	0	0	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	t0007	1413	4	4	0	0	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	t0008	1413	2	0	2	0	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	t0009	1413	2	0	1	0	1	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	t0010	1413	2	2	0	0	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	t0011	1413	2	2	0	0	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	t0012	1413	2	0	0	2	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	t0013	1413	1	0	0	0	1	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	t0014	1413	1	0	0	1	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	t0015	1413	1	0	0	1	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST4_chr1_44778585_44793170	1/0	t0001	1091	199	41	40	81	6	30	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/1	t0002	1091	160	29	25	82	7	16	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	t0003	1090	14	13	1	0	0	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	t0004	1091	6	5	1	0	0	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	t0005	1091	2	0	0	2	0	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	t0006	1091	1	1	0	0	0	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	t0007	1091	1	0	0	1	0	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	t0008	1091	1	0	0	1	0	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	t0009	1091	1	0	1	0	0	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	t0010	1110	1	0	0	1	0	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	t0011	1091	1	0	0	1	0	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	t0012	1091	1	0	0	0	1	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	t0013	1064	1	0	0	1	0	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	t0014	1090	1	1	0	0	0	0	copy fasta	BEST4	chr1	44778585	44793170
BET1L_chr11_197924_212399	1/0	t0001	2457	78	20	7	28	4	18	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0002	2478	75	1	16	56	0	2	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0003	2485	65	10	10	34	3	8	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0004	2451	41	6	7	24	0	4	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0005	2478	31	1	8	18	0	4	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/1	t0006	2478	25	4	14	0	4	2	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0007	2478	19	18	1	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0008	2478	8	2	5	0	1	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0009	2478	6	6	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0010	2499	5	0	2	3	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0011	2478	3	0	0	3	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0012	2478	3	2	1	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0013	2478	3	2	1	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0014	2451	3	0	0	0	0	3	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0015	2478	2	2	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0016	2478	2	2	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0017	2478	2	2	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0018	2457	2	1	1	0	0	0	copy fasta	BET1L	chr11	197924	212399