JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNAI2_chr8_48912598_48926429	0/0	t0009	1374	1	1	0	0	0	0	copy fasta	SNAI2	chr8	48912598	48926429
SNAI2_chr8_48912598_48926429	0/0	t0010	1374	1	0	0	0	0	1	copy fasta	SNAI2	chr8	48912598	48926429
SNAI3_chr16_88672688_88691507	0/1	t0001	863	154	24	22	86	4	17	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	t0002	859	118	18	22	58	7	13	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	t0003	862	55	10	14	16	4	11	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	1/0	t0004	862	15	2	7	1	1	3	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	t0005	863	13	0	9	1	1	2	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	t0006	863	10	10	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	t0007	862	8	6	2	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	t0008	859	7	6	1	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	t0009	863	4	4	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	t0010	863	3	3	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	t0011	863	3	3	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	t0012	862	3	2	1	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	t0013	862	2	0	0	0	1	1	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	t0014	862	1	1	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	t0015	862	1	1	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	t0016	859	1	0	1	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	t0017	862	1	0	1	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	t0018	862	1	0	0	0	0	1	copy fasta	SNAI3	chr16	88672688	88691507
SNAP23_chr15_42490634_42538058	1/1	t0001	1675	211	32	55	91	6	25	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	t0002	1675	33	12	10	1	3	7	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	t0003	1675	31	25	5	0	1	0	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	t0004	1673	13	13	0	0	0	0	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	t0005	1675	3	0	0	3	0	0	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	t0006	1675	3	3	0	0	0	0	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	t0007	1675	3	0	0	3	0	0	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	t0008	1675	2	2	0	0	0	0	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	t0009	1675	2	1	1	0	0	0	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	t0010	1675	1	1	0	0	0	0	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	t0011	1675	1	1	0	0	0	0	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	t0012	1675	1	1	0	0	0	0	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	t0013	1675	1	1	0	0	0	0	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	t0014	1675	1	1	0	0	0	0	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	t0015	1675	1	1	0	0	0	0	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	t0016	1664	1	0	1	0	0	0	copy fasta	SNAP23	chr15	42490634	42538058
SNAP25_chr20_10213830_10312418	0/0	t0001	1433	187	42	33	93	4	15	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	1/0	t0002	1433	80	16	14	37	4	8	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/1	t0003	1433	33	5	19	1	3	4	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/0	t0004	1433	10	10	0	0	0	0	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/0	t0005	1433	6	6	0	0	0	0	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/0	t0006	1433	4	4	0	0	0	0	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/0	t0007	1433	3	0	0	0	1	2	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/0	t0008	1433	3	2	1	0	0	0	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/0	t0009	1433	2	1	1	0	0	0	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/0	t0010	1433	2	0	0	2	0	0	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/0	t0011	1433	1	1	0	0	0	0	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/0	t0012	1433	1	0	0	1	0	0	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/0	t0013	1433	1	0	0	1	0	0	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/0	t0014	1433	1	1	0	0	0	0	copy fasta	SNAP25	chr20	10213830	10312418