JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNAP25_chr20_10213830_10312418	0/0	t0015	1433	1	0	0	1	0	0	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/0	t0016	1433	1	0	0	1	0	0	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/0	t0017	1433	1	0	0	1	0	0	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/0	t0018	1433	1	0	0	0	0	1	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/0	t0019	1433	1	1	0	0	0	0	copy fasta	SNAP25	chr20	10213830	10312418
SNAP25_chr20_10213830_10312418	0/0	t0020	1433	1	1	0	0	0	0	copy fasta	SNAP25	chr20	10213830	10312418
SNAP29_chr22_20854007_20896214	0/0	t0001	3474	102	19	25	44	4	10	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0002	3483	42	1	17	15	3	6	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0003	3474	18	0	3	9	0	6	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0004	3476	14	3	2	9	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0005	3479	13	5	0	4	0	4	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0006	3471	11	2	5	3	1	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0007	3478	10	6	3	1	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0008	3481	9	0	0	9	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0009	3485	8	0	4	4	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0010	3462	7	1	0	6	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0011	3475	7	2	1	3	1	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0012	3477	5	2	0	0	0	3	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/1	t0013	3475	5	0	0	1	0	3	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0014	3498	4	4	0	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0015	3481	4	0	0	4	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0016	3473	4	0	2	1	0	1	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0017	3479	4	0	1	3	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0018	3474	4	3	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0019	3486	4	0	0	4	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0020	3484	4	0	0	4	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0021	3476	3	0	0	3	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0022	3472	3	2	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0023	3480	3	2	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0024	3474	3	0	0	3	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0025	3487	3	0	0	3	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0026	3471	3	0	1	0	1	1	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0027	3480	3	0	0	3	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0028	3476	3	0	3	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0029	3474	2	0	0	0	2	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0030	3464	2	0	0	0	0	2	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0031	3476	2	0	0	2	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0032	3477	2	2	0	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0033	3502	2	2	0	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0034	3496	2	2	0	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0035	3496	2	2	0	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0036	3488	2	2	0	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0037	3486	2	0	0	2	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0038	3481	2	0	0	2	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0039	3473	2	0	1	0	0	1	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0040	3476	2	2	0	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0041	3473	2	2	0	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0042	3474	1	0	0	0	0	1	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0043	3475	1	0	0	1	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0044	3467	1	0	0	1	0	0	copy fasta	SNAP29	chr22	20854007	20896214