JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SNAP29_chr22_20854007_20896214	0/0	t0045	3475	1	0	0	1	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0046	3471	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0047	3474	1	0	0	1	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0048	3490	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	1/0	t0049	3483	1	0	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0050	3465	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0051	3484	1	0	1	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0052	3482	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0053	3474	1	0	0	0	1	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0054	3474	1	0	0	1	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0055	3474	1	0	0	1	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0056	3473	1	0	1	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0057	3472	1	0	1	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0058	3469	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0059	3474	1	0	0	0	1	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0060	3480	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0061	3463	1	0	0	1	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0062	3512	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0063	3504	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0064	3502	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0065	3501	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0066	3500	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0067	3501	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0068	3494	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0069	3494	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0070	3494	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0071	3495	1	0	1	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0072	3493	1	0	0	1	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0073	3491	1	0	0	0	1	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0074	3487	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0075	3486	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0076	3484	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0077	3483	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0078	3484	1	0	0	1	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0079	3475	1	0	1	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0080	3481	1	0	0	1	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0081	3471	1	0	1	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0082	3479	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0083	3478	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0084	3477	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0085	3476	1	0	0	1	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0086	3480	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0087	3476	1	0	1	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0088	3474	1	0	0	0	1	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0089	3477	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0090	3477	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0091	3475	1	1	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0092	3490	1	0	0	1	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0093	3488	1	0	0	1	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	t0094	3478	1	0	0	1	0	copy fasta	SNAP29	chr22	20854007	20896214