JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNAP47_chr1_227730435_227786226	1/1	t0001	664	377	81	75	158	18	43	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	t0002	664	10	9	1	0	0	0	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	t0003	664	5	5	0	0	0	0	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	t0004	664	2	0	0	1	0	1	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	t0005	664	1	0	0	1	0	0	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	t0006	664	1	1	0	0	0	0	copy fasta	SNAP47	chr1	227730435	227786226
SNAP91_chr6_83547885_83714101	0/1	t0001	1699	280	73	46	120	12	28	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	t0002	1699	40	0	7	33	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	t0003	1699	11	0	2	5	1	3	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	1/0	t0004	1699	10	1	3	1	1	3	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	t0005	1699	7	7	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	t0006	1699	3	3	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	t0007	1699	2	0	0	2	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	t0008	1699	2	0	2	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	t0009	1699	2	0	0	0	0	2	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	t0010	1699	2	2	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	t0011	1699	1	1	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	t0012	1699	1	1	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	t0013	1699	1	1	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	t0014	1699	1	0	1	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	t0015	1699	1	0	0	1	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	t0016	1699	1	0	1	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAP91_chr6_83547885_83714101	0/0	t0017	1699	1	1	0	0	0	0	copy fasta	SNAP91	chr6	83547885	83714101
SNAPC1_chr14_61757420_61801428	1/0	t0001	1487	153	36	39	60	3	14	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0002	1539	49	8	11	24	1	5	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0003	1556	28	3	6	13	3	3	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0004	1504	28	7	2	16	0	3	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0005	1488	27	2	2	23	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0006	1487	10	6	0	1	0	3	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0007	1522	9	2	3	4	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0008	1488	7	0	0	7	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0009	1487	6	2	3	0	1	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0010	1521	5	4	1	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0011	1521	4	4	0	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0012	1487	3	0	2	1	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/1	t0013	1555	2	0	0	0	0	1	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0014	1538	2	2	0	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0015	1539	2	0	2	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0016	1487	2	2	0	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0017	1489	2	0	0	2	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0018	1573	1	1	0	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0019	1557	1	0	0	0	0	1	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0020	1556	1	1	0	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0021	1539	1	0	0	0	0	1	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0022	1538	1	1	0	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0023	1539	1	0	0	1	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0024	1538	1	0	0	0	0	1	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0025	1539	1	0	1	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0026	1503	1	0	1	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0027	1504	1	1	0	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428