JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNAPC1_chr14_61757420_61801428	0/0	t0028	1487	1	1	0	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0029	1487	1	1	0	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0030	1487	1	0	1	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0031	1487	1	1	0	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0032	1488	1	1	0	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0033	1487	1	1	0	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC1_chr14_61757420_61801428	0/0	t0034	1488	1	1	0	0	0	0	copy fasta	SNAPC1	chr14	61757420	61801428
SNAPC2_chr19_7915338_7928250	1/1	t0001	516	193	52	33	88	4	14	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	t0002	516	152	9	25	84	8	26	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	t0003	516	31	5	17	1	5	3	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	t0004	516	13	13	0	0	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	t0005	516	13	12	0	0	1	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	t0006	516	11	0	0	11	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	t0007	516	7	0	6	0	0	1	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	t0008	516	2	0	0	0	0	2	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	t0009	516	2	1	1	0	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	t0010	516	1	0	1	0	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	t0011	516	1	0	0	1	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	t0012	516	1	0	0	1	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	t0013	516	1	0	1	0	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	t0014	516	1	1	0	0	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC2_chr19_7915338_7928250	0/0	t0015	516	1	1	0	0	0	0	copy fasta	SNAPC2	chr19	7915338	7928250
SNAPC3_chr9_15417876_15466626	0/1	t0001	1765	160	26	35	75	3	20	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	1/0	t0002	1765	38	0	1	25	1	10	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0003	1765	29	2	1	23	0	3	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0004	1765	15	10	3	1	0	1	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0005	1765	14	13	1	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0006	1765	13	13	0	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0007	1765	9	5	3	0	0	1	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0008	1765	6	5	1	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0009	1765	4	4	0	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0010	1765	2	2	0	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0011	1765	2	0	2	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0012	1765	2	0	0	2	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0013	1765	2	0	0	2	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0014	1765	2	0	0	2	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0015	1765	2	0	0	0	0	2	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0016	1746	1	1	0	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0017	1765	1	0	1	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0018	1765	1	0	0	1	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0019	1765	1	0	0	0	0	1	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0020	1765	1	1	0	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0021	1765	1	0	1	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0022	1765	1	0	1	0	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC3_chr9_15417876_15466626	0/0	t0023	1765	1	0	0	1	0	0	copy fasta	SNAPC3	chr9	15417876	15466626
SNAPC4_chr9_136370571_136405170	1/0	t0001	284	217	55	40	79	12	30	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/1	t0002	284	147	27	34	62	6	17	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	t0003	284	12	6	5	0	0	1	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	t0004	284	1	0	1	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	t0005	284	1	0	1	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170