JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNAPC4_chr9_136370571_136405170	0/0	t0006	284	1	0	1	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	t0007	284	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC5_chr15_66488468_66502762	0/0	t0001	994	144	11	39	80	2	12	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/1	t0002	999	123	47	19	28	13	15	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	t0003	989	57	0	5	45	3	4	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	t0004	999	42	4	10	23	0	5	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	t0005	992	34	15	4	11	0	4	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	t0006	999	6	4	2	0	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	t0007	999	5	5	0	0	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	t0008	989	3	1	0	2	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	t0009	994	2	0	0	0	0	2	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	t0010	999	2	2	0	0	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	t0011	989	1	0	0	1	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	t0012	989	1	0	0	1	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	t0013	994	1	1	0	0	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	t0014	992	1	0	1	0	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	t0015	992	1	1	0	0	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	t0016	994	1	1	0	0	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	t0017	994	1	0	0	1	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	t0018	999	1	1	0	0	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	1/0	t0019	1000	1	0	0	0	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	t0020	994	1	1	0	0	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPIN_chr1_153653703_153666852	0/0	t0001	593	243	60	47	101	10	25	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	1/1	t0002	593	134	25	22	67	3	15	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	0/0	t0003	593	7	7	0	0	0	0	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	0/0	t0004	593	4	0	0	4	0	0	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	0/0	t0005	593	3	3	0	0	0	0	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	0/0	t0006	593	3	0	2	0	1	0	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	0/0	t0007	593	1	1	0	0	0	0	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	0/0	t0008	593	1	0	0	1	0	0	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	0/0	t0009	593	1	1	0	0	0	0	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	0/0	t0010	593	1	0	0	1	0	0	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	0/0	t0011	593	1	0	1	0	0	0	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	0/0	t0012	593	1	1	0	0	0	0	copy fasta	SNAPIN	chr1	153653703	153666852
SNCAIP_chr5_122307237_122469219	1/1	t0001	818	184	51	37	66	6	22	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	t0002	818	26	4	6	14	0	2	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	t0003	818	6	6	0	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	t0004	818	2	2	0	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	t0005	818	2	2	0	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	t0006	818	1	0	1	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	t0007	818	1	1	0	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCA_chr4_89719099_89842161	0/0	t0001	2758	115	21	27	49	5	13	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0002	2756	106	12	13	72	0	9	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0003	2757	24	2	0	18	0	4	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0004	2759	16	1	9	0	3	3	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0005	2757	12	1	7	4	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0006	2755	7	7	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0007	2758	6	3	3	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0008	2759	5	1	0	1	0	3	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0009	2756	4	4	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161