JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNCA_chr4_89719099_89842161	0/0	t0010	2755	4	0	2	0	2	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0011	2758	4	4	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0012	2758	4	4	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0013	2759	3	3	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0014	2759	3	3	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0015	2757	3	2	0	1	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0016	2751	2	1	1	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0017	2759	2	2	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0018	2757	1	0	1	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0019	2758	1	1	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0020	2758	1	1	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0021	2755	1	1	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0022	2756	1	0	0	1	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0023	2758	1	1	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0024	2757	1	1	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0025	2760	1	1	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0026	2751	1	1	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0027	2751	1	1	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0028	2756	1	0	0	0	0	1	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0029	2756	1	0	0	1	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0030	2758	1	1	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0031	2760	1	1	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0032	2752	1	1	0	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0033	2756	1	0	0	0	0	1	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0034	2751	1	0	1	0	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	t0035	2758	1	0	0	1	0	0	copy fasta	SNCA	chr4	89719099	89842161
SNCB_chr5_176615082_176635534	0/0	t0001	995	129	41	16	56	2	14	copy fasta	SNCB	chr5	176615082	176635534
SNCB_chr5_176615082_176635534	0/0	t0002	995	103	4	13	79	0	7	copy fasta	SNCB	chr5	176615082	176635534
SNCB_chr5_176615082_176635534	0/0	t0003	995	98	17	15	53	4	9	copy fasta	SNCB	chr5	176615082	176635534
SNCB_chr5_176615082_176635534	0/1	t0004	995	75	13	35	7	4	15	copy fasta	SNCB	chr5	176615082	176635534
SNCB_chr5_176615082_176635534	0/0	t0005	995	10	6	2	0	2	0	copy fasta	SNCB	chr5	176615082	176635534
SNCB_chr5_176615082_176635534	1/0	t0006	994	6	5	0	0	0	0	copy fasta	SNCB	chr5	176615082	176635534
SNCB_chr5_176615082_176635534	0/0	t0007	995	5	5	0	0	0	0	copy fasta	SNCB	chr5	176615082	176635534
SNCB_chr5_176615082_176635534	0/0	t0008	1001	3	3	0	0	0	0	copy fasta	SNCB	chr5	176615082	176635534
SNCB_chr5_176615082_176635534	0/0	t0009	995	2	0	0	2	0	0	copy fasta	SNCB	chr5	176615082	176635534
SNCB_chr5_176615082_176635534	0/0	t0010	995	2	2	0	0	0	0	copy fasta	SNCB	chr5	176615082	176635534
SNCB_chr5_176615082_176635534	0/0	t0011	1001	1	0	0	1	0	0	copy fasta	SNCB	chr5	176615082	176635534
SNCB_chr5_176615082_176635534	0/0	t0012	995	1	0	0	0	0	1	copy fasta	SNCB	chr5	176615082	176635534
SNCB_chr5_176615082_176635534	0/0	t0013	995	1	0	1	0	0	0	copy fasta	SNCB	chr5	176615082	176635534
SNCG_chr10_86953599_86968258	0/0	t0001	373	182	37	31	82	7	25	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	1/1	t0002	373	167	30	35	69	8	23	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	t0003	373	13	12	1	0	0	0	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	t0004	373	7	3	2	1	1	0	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	t0005	373	7	6	1	0	0	0	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	t0006	373	5	0	0	5	0	0	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	t0007	373	5	4	1	0	0	0	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	t0008	373	4	2	2	0	0	0	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	t0009	373	3	0	1	0	2	0	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	t0010	373	3	2	1	0	0	0	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	t0011	373	2	0	1	1	0	0	copy fasta	SNCG	chr10	86953599	86968258