JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNCG_chr10_86953599_86968258	0/0	t0012	373	1	0	0	1	0	0	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	t0013	373	1	0	0	1	0	0	copy fasta	SNCG	chr10	86953599	86968258
SND1_chr7_127647194_128097593	1/0	t0001	716	208	41	42	83	11	30	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	t0002	716	26	15	4	7	0	0	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/1	t0003	716	23	12	2	2	2	4	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	t0004	716	2	2	0	0	0	0	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	t0005	716	1	0	1	0	0	0	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	t0006	716	1	0	0	0	1	0	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	t0007	716	1	0	1	0	0	0	copy fasta	SND1	chr7	127647194	128097593
SNED1_chr2_240993618_241100568	1/0	t0001	4152	46	2	10	26	1	6	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0002	4151	38	5	10	14	6	3	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0003	4153	20	5	2	9	1	3	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0004	4065	20	4	3	11	1	1	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0005	4153	20	0	2	15	0	3	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0006	4067	19	0	1	17	1	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0007	4068	16	0	4	11	0	1	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0008	4068	14	0	5	9	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0009	4154	11	3	1	4	1	2	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0010	4064	11	0	0	11	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0011	4066	9	8	1	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0012	4066	8	1	4	3	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0013	4065	8	0	0	6	0	2	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0014	4065	7	7	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0015	4065	7	7	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0016	4064	7	7	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/1	t0017	4155	6	0	0	2	0	3	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0018	4152	5	1	0	1	0	3	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0019	4063	5	5	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0020	4150	5	2	0	1	1	1	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0021	4066	4	4	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0022	4066	3	3	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0023	4152	3	0	0	0	0	3	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0024	4065	3	3	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0025	4065	3	1	2	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0026	4064	2	2	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0027	4066	2	2	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0028	4067	2	2	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0029	4064	2	1	0	0	0	1	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0030	4066	2	2	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0031	4065	2	0	0	2	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0032	4068	1	0	0	1	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0033	4068	1	0	1	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0034	4065	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0035	4066	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0036	4068	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0037	4065	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0038	4065	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0039	4067	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0040	4154	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0041	4151	1	0	1	0	0	0	copy fasta	SNED1	chr2	240993618	241100568