JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNED1_chr2_240993618_241100568	0/0	t0042	4148	1	0	1	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0043	4152	1	0	0	0	0	1	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0044	4063	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0045	4064	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0046	4068	1	0	0	0	0	1	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0047	4066	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0048	4152	1	0	1	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0049	4237	1	0	0	0	0	1	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0050	4151	1	0	0	1	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0051	4153	1	0	0	1	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0052	4151	1	0	0	0	0	1	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0053	4215	1	0	0	1	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0054	4152	1	0	0	1	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0055	4150	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0056	4066	1	0	1	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0057	4151	1	0	0	0	0	1	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0058	4152	1	0	0	1	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0059	4152	1	0	0	0	0	1	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0060	4067	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0061	4066	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0062	4064	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0063	4065	1	1	0	0	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0064	4068	1	0	0	1	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	t0065	4066	1	0	0	1	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNF8_chr17_48924316_48949842	0/0	t0001	1268	176	2	36	114	7	17	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	1/0	t0002	1268	98	28	23	38	2	6	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/0	t0003	1268	51	29	5	8	2	7	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/1	t0004	1268	24	2	5	10	3	3	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/0	t0005	1268	15	11	4	0	0	0	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/0	t0006	1268	8	8	0	0	0	0	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/0	t0007	1267	6	6	0	0	0	0	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/0	t0008	1268	6	1	0	1	0	4	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/0	t0009	1268	2	0	0	2	0	0	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/0	t0010	1268	1	0	0	0	0	1	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/0	t0011	1268	1	1	0	0	0	0	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/0	t0012	1268	1	0	0	1	0	0	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/0	t0013	1268	1	0	1	0	0	0	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/0	t0014	1268	1	0	0	1	0	0	copy fasta	SNF8	chr17	48924316	48949842
SNF8_chr17_48924316_48949842	0/0	t0015	1268	1	0	0	1	0	0	copy fasta	SNF8	chr17	48924316	48949842
SNIP1_chr1_37529449_37559293	0/0	t0001	3374	136	8	40	74	6	8	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0002	3388	33	0	0	29	0	4	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0003	3390	19	0	2	17	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0004	3375	18	4	4	7	0	3	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0005	3387	17	1	1	11	0	4	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0006	3396	9	0	5	0	1	3	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0007	3372	7	0	2	1	2	2	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0008	3386	6	0	0	6	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0009	3402	6	5	0	0	0	1	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0010	3404	6	5	0	0	0	1	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0011	3404	6	5	1	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293