JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNIP1_chr1_37529449_37559293	0/0	t0012	3408	5	4	1	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0013	3389	5	0	1	2	1	1	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0014	3391	4	0	0	3	0	1	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0015	3384	4	2	1	0	0	1	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0016	3400	4	4	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0017	3406	4	1	1	0	0	2	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0018	3374	4	4	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0019	3389	3	0	0	3	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0020	3392	3	0	1	2	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0021	3402	3	0	3	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0022	3374	3	0	0	3	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0023	3374	3	0	3	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0024	3408	3	1	0	1	1	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0025	3412	3	1	0	1	0	1	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0026	3416	3	0	0	1	0	2	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0027	3391	3	0	1	0	1	1	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0028	3396	3	1	2	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0029	3406	3	3	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0030	3393	3	3	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0031	3374	2	2	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/1	t0032	3400	2	0	0	0	0	1	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	1/0	t0033	3364	2	0	1	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0034	3384	2	2	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0035	3398	2	2	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0036	3410	2	0	0	2	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0037	3414	2	0	0	0	0	2	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0038	3386	2	0	0	1	0	1	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0039	3397	2	2	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0040	3394	2	2	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0041	3407	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0042	3375	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0043	3364	1	0	1	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0044	3374	1	0	1	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0045	3384	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0046	3406	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0047	3378	1	0	1	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0048	3386	1	0	0	1	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0049	3394	1	0	1	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0050	3398	1	0	1	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0051	3404	1	0	0	1	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0052	3410	1	0	0	0	0	1	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0053	3422	1	0	0	0	1	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0054	3400	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0055	3402	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0056	3404	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0057	3404	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0058	3409	1	0	1	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0059	3415	1	0	0	1	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0060	3365	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0061	3374	1	0	0	0	0	1	copy fasta	SNIP1	chr1	37529449	37559293