Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BET1L_chr11_197924_212399	0/0	t0019	2457	2	2	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0020	2457	1	1	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0021	2499	1	1	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0022	2499	1	0	1	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0023	2499	1	1	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0024	2442	1	1	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0025	2478	1	1	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0026	2478	1	0	0	1	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0027	2478	1	1	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0028	2478	1	1	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0029	2478	1	0	0	1	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0030	2478	1	1	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0031	2478	1	1	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0032	2478	1	1	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0033	2478	1	1	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0034	2485	1	0	0	1	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0035	2485	1	0	0	0	0	1	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0036	2485	1	0	1	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0037	2485	1	0	0	1	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0038	2485	1	0	1	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0039	2485	1	1	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0040	2478	1	0	0	0	0	1	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0041	2457	1	0	0	0	0	1	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0042	2457	1	1	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0043	2457	1	0	0	1	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0044	2457	1	1	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0045	2457	1	1	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	t0046	2485	1	0	0	1	0	0	copy fasta	BET1L	chr11	197924	212399
BET1_chr7_93988245_94009355	1/1	t0001	1125	250	75	40	96	6	31	copy fasta	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	t0002	1125	146	11	24	92	6	13	copy fasta	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	t0003	1125	2	2	0	0	0	0	copy fasta	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	t0004	1125	1	1	0	0	0	0	copy fasta	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	t0005	1125	1	0	0	1	0	0	copy fasta	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	t0006	1125	1	1	0	0	0	0	copy fasta	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	t0007	1125	1	0	0	1	0	0	copy fasta	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	t0008	1125	1	1	0	0	0	0	copy fasta	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	t0009	1125	1	1	0	0	0	0	copy fasta	BET1	chr7	93988245	94009355
BEX1_chrX_103057651_103069171	1/0	t0001	418	279	66	51	134	10	17	copy fasta	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/1	t0002	418	50	2	12	27	1	7	copy fasta	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	t0003	418	8	8	0	0	0	0	copy fasta	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	t0004	419	2	0	0	2	0	0	copy fasta	BEX1	chrX	103057651	103069171
BEX2_chrX_103304346_103315990	1/1	t0001	457	277	67	40	130	9	29	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	t0002	457	12	0	8	0	1	3	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	t0003	457	8	1	6	0	1	0	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	t0004	457	4	0	0	4	0	0	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	t0005	456	2	0	0	2	0	0	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	t0006	457	1	0	0	1	0	0	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	t0007	457	1	1	0	0	0	0	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	t0008	457	1	1	0	0	0	0	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	t0009	458	1	0	0	1	0	0	copy fasta	BEX2	chrX	103304346	103315990