JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNIP1_chr1_37529449_37559293	0/0	t0062	3382	1	0	0	0	1	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0063	3385	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0064	3386	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0065	3390	1	0	0	0	0	1	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0066	3390	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0067	3396	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0068	3397	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0069	3400	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0070	3401	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0071	3402	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0072	3409	1	0	1	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0073	3414	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0074	3428	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0075	3432	1	0	0	1	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0076	3374	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0077	3390	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0078	3410	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0079	3386	1	0	0	1	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0080	3418	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0081	3390	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0082	3389	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0083	3389	1	1	0	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0084	3392	1	0	0	1	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNIP1_chr1_37529449_37559293	0/0	t0085	3374	1	0	1	0	0	0	copy fasta	SNIP1	chr1	37529449	37559293
SNN_chr16_11663455_11684152	1/1	t0001	2998	189	18	53	90	7	19	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0002	3003	78	9	15	40	5	9	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0003	3005	32	0	3	25	2	2	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0004	3003	27	1	0	19	0	7	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0005	2998	18	0	0	18	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0006	3005	16	16	0	0	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0007	2984	15	14	1	0	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0008	3005	10	8	2	0	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0009	3005	8	5	1	0	1	1	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0010	3003	5	5	0	0	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0011	3005	4	0	0	4	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0012	3003	4	0	3	0	1	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0013	3003	3	0	0	3	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0014	3003	3	3	0	0	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0015	2998	2	2	0	0	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0016	3005	2	0	0	2	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0017	3005	2	0	0	0	0	2	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0018	3005	2	2	0	0	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0019	2998	2	0	0	0	0	2	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0020	3003	1	0	0	1	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0021	3005	1	0	0	1	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0022	3005	1	0	0	1	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0023	2998	1	0	0	1	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0024	3003	1	0	0	1	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0025	3005	1	1	0	0	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0026	3003	1	0	0	1	0	0	copy fasta	SNN	chr16	11663455	11684152