JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNN_chr16_11663455_11684152	0/0	t0027	3003	1	0	0	0	0	1	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0028	3005	1	0	0	1	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0029	3005	1	1	0	0	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0030	3005	1	1	0	0	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0031	3003	1	0	0	0	0	1	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0032	2998	1	0	1	0	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0033	3005	1	1	0	0	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0034	3005	1	0	1	0	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0035	3005	1	1	0	0	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0036	3005	1	1	0	0	0	0	copy fasta	SNN	chr16	11663455	11684152
SNN_chr16_11663455_11684152	0/0	t0037	3005	1	1	0	0	0	0	copy fasta	SNN	chr16	11663455	11684152
SNORC_chr2_232865264_232883700	1/0	t0001	2423	218	56	33	92	8	28	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/1	t0002	2423	78	17	20	27	6	7	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0003	2423	63	3	5	47	2	6	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0004	2423	42	1	13	22	2	4	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0005	2423	6	0	3	3	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0006	2423	5	1	3	0	0	1	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0007	2423	4	0	0	4	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0008	2423	4	4	0	0	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0009	2423	3	3	0	0	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0010	2423	2	2	0	0	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0011	2423	2	0	2	0	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0012	2423	2	0	0	2	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0013	2423	2	2	0	0	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0014	2423	2	2	0	0	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0015	2423	2	0	0	2	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0016	2423	2	2	0	0	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0017	2423	2	0	0	2	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0018	2423	1	0	0	0	0	1	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0019	2423	1	0	0	1	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0020	2436	1	0	0	1	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0021	2423	1	1	0	0	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0022	2423	1	1	0	0	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0023	2423	1	0	0	1	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0024	2423	1	0	1	0	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0025	2423	1	0	0	0	0	1	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0026	2423	1	0	0	1	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0027	2423	1	1	0	0	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0028	2423	1	1	0	0	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0029	2423	1	1	0	0	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNORC_chr2_232865264_232883700	0/0	t0030	2423	1	0	0	1	0	0	copy fasta	SNORC	chr2	232865264	232883700
SNPH_chr20_1261294_1314327	0/0	t0001	3977	103	11	18	60	4	10	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/1	t0002	3977	101	13	17	54	6	10	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0003	3977	30	20	6	1	0	3	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0004	3977	26	1	5	14	2	4	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0005	3977	10	10	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0006	3977	9	0	5	0	3	1	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0007	3977	8	8	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0008	3977	8	0	7	0	0	1	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0009	3977	6	4	2	0	0	0	copy fasta	SNPH	chr20	1261294	1314327