JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNPH_chr20_1261294_1314327	0/0	t0010	3977	4	3	1	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	1/0	t0011	3977	3	2	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0012	3977	3	0	0	3	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0013	3977	2	0	0	2	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0014	3977	2	2	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0015	3977	2	2	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0016	3977	2	2	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0017	3977	2	0	0	0	0	2	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0018	3977	2	1	1	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0019	3977	2	0	1	0	1	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0020	3977	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0021	3977	1	0	0	0	0	1	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0022	3977	1	0	0	0	0	1	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0023	3977	1	0	1	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0024	3977	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0025	3977	1	0	0	1	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0026	3977	1	0	0	0	0	1	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0027	3977	1	0	0	1	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0028	3977	1	0	0	1	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0029	3977	1	0	1	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0030	3977	1	0	0	1	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0031	3977	1	0	0	0	0	1	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0032	3977	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0033	3977	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0034	3977	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0035	3977	1	0	1	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0036	3977	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0037	3977	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0038	3977	1	0	0	1	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0039	3977	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0040	3977	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0041	3977	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0042	3977	1	0	0	1	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0043	3977	1	1	0	0	0	0	copy fasta	SNPH	chr20	1261294	1314327
SNPH_chr20_1261294_1314327	0/0	t0044	3977	1	0	0	0	0	1	copy fasta	SNPH	chr20	1261294	1314327
SNRK_chr3_43281540_43356143	1/0	t0001	2891	112	34	29	31	2	15	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0002	2892	64	8	17	26	5	8	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/1	t0003	2894	31	2	5	20	1	2	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0004	2890	14	12	2	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0005	2883	12	12	0	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0006	2891	7	7	0	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0007	2891	2	2	0	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0008	2891	2	2	0	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0009	2892	2	0	2	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0010	2891	1	0	0	1	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0011	2891	1	1	0	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0012	2891	1	1	0	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0013	2913	1	0	1	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0014	2892	1	0	0	1	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0015	2892	1	0	1	0	0	0	copy fasta	SNRK	chr3	43281540	43356143