JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNRK_chr3_43281540_43356143	0/0	t0016	2894	1	0	0	1	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0017	2894	1	0	0	1	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0018	2892	1	0	1	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0019	2891	1	0	0	0	0	1	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0020	2892	1	0	0	1	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRK_chr3_43281540_43356143	0/0	t0021	2890	1	1	0	0	0	0	copy fasta	SNRK	chr3	43281540	43356143
SNRNP200_chr2_96269338_96310546	1/1	t0001	784	333	70	67	151	12	31	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	t0002	784	7	0	0	7	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	t0003	784	4	0	0	4	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	t0004	786	3	3	0	0	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	t0005	784	1	0	1	0	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	t0006	784	1	1	0	0	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	t0007	784	1	1	0	0	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	t0008	784	1	0	0	0	0	1	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP200_chr2_96269338_96310546	0/0	t0009	784	1	1	0	0	0	0	copy fasta	SNRNP200	chr2	96269338	96310546
SNRNP25_chr16_48828_62669	0/1	t0001	716	201	39	26	98	10	27	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	1/0	t0002	716	113	2	17	78	5	10	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	t0003	716	39	27	6	0	3	3	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	t0004	716	28	3	16	4	0	5	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	t0005	716	9	0	8	1	0	0	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	t0006	716	8	5	3	0	0	0	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	t0007	716	6	6	0	0	0	0	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	t0008	716	6	6	0	0	0	0	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	t0009	716	4	3	0	0	0	1	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	t0010	716	3	2	0	0	0	1	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	t0011	716	2	1	1	0	0	0	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	t0012	716	2	1	1	0	0	0	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	t0013	716	1	0	0	0	0	1	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	t0014	716	1	0	0	1	0	0	copy fasta	SNRNP25	chr16	48828	62669
SNRNP25_chr16_48828_62669	0/0	t0015	716	1	1	0	0	0	0	copy fasta	SNRNP25	chr16	48828	62669
SNRNP27_chr2_69888956_69910236	1/0	t0001	958	157	16	42	68	5	25	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/1	t0002	951	98	12	8	62	5	10	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0003	958	75	14	7	49	2	3	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0004	958	33	30	3	0	0	0	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0005	959	24	6	7	7	0	4	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0006	952	21	3	5	12	0	1	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0007	959	9	3	4	2	0	0	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0008	958	3	3	0	0	0	0	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0009	951	3	0	0	3	0	0	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0010	958	3	3	0	0	0	0	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0011	958	2	2	0	0	0	0	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0012	958	2	0	2	0	0	0	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0013	959	2	0	2	0	0	0	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0014	952	1	0	0	0	0	1	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0015	951	1	0	0	1	0	0	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0016	952	1	0	0	1	0	0	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0017	951	1	0	0	1	0	0	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0018	958	1	1	0	0	0	0	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0019	958	1	0	0	1	0	0	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	t0020	958	1	1	0	0	0	0	copy fasta	SNRNP27	chr2	69888956	69910236