JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNRNP27_chr2_69888956_69910236	0/0	t0021	929	1	0	0	1	0	0	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP35_chr12_123453139_123471936	0/0	t0001	736	99	8	22	43	8	18	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	0/1	t0002	736	23	8	7	0	2	5	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	1/0	t0003	737	21	4	8	0	7	1	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	0/0	t0004	736	21	19	2	0	0	0	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	0/0	t0005	737	5	0	3	0	0	2	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	0/0	t0006	737	4	4	0	0	0	0	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	0/0	t0007	736	4	3	0	0	1	0	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	0/0	t0008	736	3	3	0	0	0	0	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	0/0	t0009	737	3	3	0	0	0	0	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	0/0	t0010	736	2	2	0	0	0	0	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	0/0	t0011	736	1	0	0	1	0	0	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP40_chr1_31254568_31301788	1/0	t0001	542	125	19	20	68	4	13	copy fasta	SNRNP40	chr1	31254568	31301788
SNRNP40_chr1_31254568_31301788	0/0	t0002	541	104	39	21	34	3	7	copy fasta	SNRNP40	chr1	31254568	31301788
SNRNP40_chr1_31254568_31301788	0/0	t0003	542	45	7	5	21	1	11	copy fasta	SNRNP40	chr1	31254568	31301788
SNRNP40_chr1_31254568_31301788	0/0	t0004	541	29	0	0	29	0	0	copy fasta	SNRNP40	chr1	31254568	31301788
SNRNP40_chr1_31254568_31301788	0/1	t0005	541	27	16	7	0	2	1	copy fasta	SNRNP40	chr1	31254568	31301788
SNRNP40_chr1_31254568_31301788	0/0	t0006	543	7	0	0	7	0	0	copy fasta	SNRNP40	chr1	31254568	31301788
SNRNP40_chr1_31254568_31301788	0/0	t0007	541	7	4	3	0	0	0	copy fasta	SNRNP40	chr1	31254568	31301788
SNRNP40_chr1_31254568_31301788	0/0	t0008	541	5	4	1	0	0	0	copy fasta	SNRNP40	chr1	31254568	31301788
SNRNP40_chr1_31254568_31301788	0/0	t0009	543	2	0	1	1	0	0	copy fasta	SNRNP40	chr1	31254568	31301788
SNRNP40_chr1_31254568_31301788	0/0	t0010	540	2	2	0	0	0	0	copy fasta	SNRNP40	chr1	31254568	31301788
SNRNP40_chr1_31254568_31301788	0/0	t0011	541	1	1	0	0	0	0	copy fasta	SNRNP40	chr1	31254568	31301788
SNRNP48_chr6_7585198_7616967	0/0	t0001	3143	125	6	22	83	3	11	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	1/0	t0002	3155	120	13	26	63	5	12	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0003	3154	65	12	15	23	5	10	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0004	3142	27	13	1	11	1	1	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/1	t0005	3149	12	3	7	0	0	1	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0006	3149	10	9	1	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0007	3149	6	6	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0008	3155	5	4	1	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0009	3154	5	1	0	2	2	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0010	3143	4	0	0	4	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0011	3155	4	4	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0012	3154	3	3	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0013	3155	3	2	1	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0014	3149	2	2	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0015	3150	2	2	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0016	3154	2	0	2	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0017	3143	2	0	0	2	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0018	3154	2	1	0	1	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0019	3155	2	0	1	0	0	1	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0020	3148	1	1	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0021	3155	1	1	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0022	3149	1	1	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0023	3150	1	1	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0024	3150	1	1	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0025	3142	1	0	0	0	0	1	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0026	3143	1	0	0	1	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0027	3155	1	0	0	0	0	1	copy fasta	SNRNP48	chr6	7585198	7616967