JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNRNP48_chr6_7585198_7616967	0/0	t0028	3143	1	0	0	1	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0029	3143	1	0	0	0	0	1	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0030	3143	1	0	0	1	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0031	3143	1	0	0	0	0	1	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0032	3143	1	1	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0033	3142	1	0	0	1	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0034	3143	1	0	1	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0035	3155	1	1	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0036	3155	1	1	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0037	3155	1	1	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0038	3154	1	1	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0039	3154	1	0	0	0	0	1	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0040	3142	1	0	0	0	0	1	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0041	3143	1	1	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0042	3155	1	1	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0043	3155	1	1	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	t0044	3155	1	0	0	1	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP70_chr19_49080451_49113604	1/0	t0001	358	282	72	58	105	10	36	copy fasta	SNRNP70	chr19	49080451	49113604
SNRNP70_chr19_49080451_49113604	0/1	t0002	358	81	15	14	42	3	6	copy fasta	SNRNP70	chr19	49080451	49113604
SNRNP70_chr19_49080451_49113604	0/0	t0003	358	1	1	0	0	0	0	copy fasta	SNRNP70	chr19	49080451	49113604
SNRNP70_chr19_49080451_49113604	0/0	t0004	358	1	0	0	0	1	0	copy fasta	SNRNP70	chr19	49080451	49113604
SNRNP70_chr19_49080451_49113604	0/0	t0005	358	1	0	0	1	0	0	copy fasta	SNRNP70	chr19	49080451	49113604
SNRPA1_chr15_101276510_101300248	1/1	t0001	285	438	97	84	193	16	46	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA1_chr15_101276510_101300248	0/0	t0002	285	3	3	0	0	0	0	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA1_chr15_101276510_101300248	0/0	t0003	285	1	0	0	1	0	0	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA_chr19_40746203_40770389	0/0	t0001	429	273	66	46	120	10	31	copy fasta	SNRPA	chr19	40746203	40770389
SNRPA_chr19_40746203_40770389	0/0	t0002	429	76	18	2	50	3	3	copy fasta	SNRPA	chr19	40746203	40770389
SNRPA_chr19_40746203_40770389	1/1	t0003	429	49	1	14	18	3	11	copy fasta	SNRPA	chr19	40746203	40770389
SNRPA_chr19_40746203_40770389	0/0	t0004	429	10	7	3	0	0	0	copy fasta	SNRPA	chr19	40746203	40770389
SNRPA_chr19_40746203_40770389	0/0	t0005	429	3	0	3	0	0	0	copy fasta	SNRPA	chr19	40746203	40770389
SNRPA_chr19_40746203_40770389	0/0	t0006	429	1	0	0	0	0	1	copy fasta	SNRPA	chr19	40746203	40770389
SNRPB2_chr20_16725026_16747564	1/0	t0001	1734	161	24	35	72	10	19	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/1	t0002	1734	85	18	10	47	2	7	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0003	1734	75	2	6	59	2	6	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0004	1735	56	22	14	8	1	11	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0005	1734	18	2	1	8	3	4	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0006	1735	18	0	3	15	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0007	1734	15	2	6	7	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0008	1734	8	7	1	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0009	1734	5	5	0	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0010	1734	2	0	0	2	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0011	1734	2	0	2	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0012	1734	2	2	0	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0013	1734	2	2	0	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0014	1734	2	0	0	2	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0015	1735	2	2	0	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0016	1734	2	2	0	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0017	1734	1	0	0	1	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0018	1734	1	1	0	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0019	1735	1	0	1	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564