JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNRPB2_chr20_16725026_16747564	0/0	t0020	1734	1	1	0	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0021	1735	1	1	0	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0022	1735	1	1	0	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0023	1734	1	0	1	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0024	1734	1	0	1	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0025	1734	1	0	1	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0026	1735	1	0	0	1	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0027	1734	1	1	0	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0028	1735	1	1	0	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0029	1734	1	1	0	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0030	1735	1	0	0	1	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0031	1734	1	0	0	1	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0032	1734	1	1	0	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	t0033	1734	1	0	0	0	0	1	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB_chr20_2456642_2475789	1/1	t0001	387	370	91	60	163	10	44	copy fasta	SNRPB	chr20	2456642	2475789
SNRPB_chr20_2456642_2475789	0/0	t0002	387	1	0	1	0	0	0	copy fasta	SNRPB	chr20	2456642	2475789
SNRPB_chr20_2456642_2475789	0/0	t0003	387	1	1	0	0	0	0	copy fasta	SNRPB	chr20	2456642	2475789
SNRPB_chr20_2456642_2475789	0/0	t0004	387	1	0	0	1	0	0	copy fasta	SNRPB	chr20	2456642	2475789
SNRPB_chr20_2456642_2475789	0/0	t0005	387	1	0	1	0	0	0	copy fasta	SNRPB	chr20	2456642	2475789
SNRPC_chr6_34752505_34778857	1/1	t0001	327	367	79	60	172	10	44	copy fasta	SNRPC	chr6	34752505	34778857
SNRPC_chr6_34752505_34778857	0/0	t0002	327	1	1	0	0	0	0	copy fasta	SNRPC	chr6	34752505	34778857
SNRPD1_chr18_21607314_21638520	0/0	t0001	4497	81	15	16	42	2	6	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	1/1	t0002	4499	78	3	16	49	2	6	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0003	4498	34	3	8	20	0	3	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0004	4500	24	1	6	13	0	4	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0005	4503	11	4	5	2	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0006	4496	9	9	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0007	4497	7	6	1	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0008	4493	6	5	1	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0009	4503	5	0	0	0	1	4	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0010	4498	5	0	2	1	1	1	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0011	4504	5	1	1	1	0	2	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0012	4492	4	3	1	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0013	4508	4	4	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0014	4499	4	4	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0015	4497	3	3	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0016	4499	2	0	0	2	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0017	4497	2	0	1	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0018	4499	2	0	0	1	0	1	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0019	4497	2	0	2	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0020	4499	2	2	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0021	4499	2	0	0	2	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0022	4498	2	0	0	2	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0023	4501	2	0	0	0	1	1	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0024	4500	2	1	0	0	0	1	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0025	4492	2	1	1	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0026	4498	2	1	1	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0027	4503	2	1	1	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0028	4493	2	2	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0029	4492	2	2	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520