JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNRPD1_chr18_21607314_21638520	0/0	t0030	4494	2	2	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0031	4504	2	2	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0032	4500	2	2	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0033	4497	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0034	4498	1	1	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0035	4498	1	0	0	0	0	1	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0036	4498	1	0	1	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0037	4497	1	0	0	0	0	1	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0038	4496	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0039	4497	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0040	4498	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0041	4498	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0042	4498	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0043	4499	1	0	0	0	1	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0044	4500	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0045	4499	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0046	4504	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0047	4499	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0048	4499	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0049	4489	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0050	4499	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0051	4509	1	1	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0052	4499	1	1	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0053	4499	1	0	1	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0054	4499	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0055	4505	1	1	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0056	4500	1	1	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0057	4501	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0058	4505	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0059	4500	1	0	0	0	0	1	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0060	4499	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0061	4515	1	1	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0062	4500	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0063	4504	1	1	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0064	4497	1	0	0	0	1	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0065	4502	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0066	4498	1	1	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0067	4493	1	1	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0068	4492	1	1	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0069	4498	1	1	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0070	4499	1	1	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0071	4503	1	1	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0072	4499	1	1	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0073	4496	1	1	0	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0074	4499	1	0	0	0	1	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0075	4500	1	0	1	0	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD1_chr18_21607314_21638520	0/0	t0076	4500	1	0	0	1	0	0	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD2_chr19_45682460_45696953	1/1	t0001	159	438	90	82	204	14	46	copy fasta	SNRPD2	chr19	45682460	45696953
SNRPD3_chr22_24550999_24579971	0/1	t0001	3086	253	32	53	124	11	32	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0002	3086	64	21	15	17	4	7	copy fasta	SNRPD3	chr22	24550999	24579971