JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNRPD3_chr22_24550999_24579971	1/0	t0003	3086	45	15	0	25	0	4	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0004	3086	6	6	0	0	0	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0005	3086	5	5	0	0	0	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0006	3086	4	0	0	4	0	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0007	3086	4	4	0	0	0	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0008	3086	3	0	0	1	0	2	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0009	3086	2	0	1	0	1	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0010	3086	2	0	0	0	0	2	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0011	3086	1	0	0	0	0	1	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0012	3086	1	0	0	1	0	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0013	3086	1	1	0	0	0	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0014	3086	1	1	0	0	0	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0015	3086	1	0	0	1	0	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0016	3086	1	1	0	0	0	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0017	3086	1	0	0	1	0	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0018	3086	1	1	0	0	0	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0019	3086	1	1	0	0	0	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0020	3086	1	1	0	0	0	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0021	3086	1	0	1	0	0	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	t0022	3086	1	1	0	0	0	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPE_chr1_203856599_203876152	0/1	t0001	1282	272	58	56	122	11	24	copy fasta	SNRPE	chr1	203856599	203876152
SNRPE_chr1_203856599_203876152	0/0	t0002	1282	86	12	15	49	3	7	copy fasta	SNRPE	chr1	203856599	203876152
SNRPE_chr1_203856599_203876152	1/0	t0003	1282	10	9	0	0	0	0	copy fasta	SNRPE	chr1	203856599	203876152
SNRPE_chr1_203856599_203876152	0/0	t0004	1282	9	9	0	0	0	0	copy fasta	SNRPE	chr1	203856599	203876152
SNRPE_chr1_203856599_203876152	0/0	t0005	1282	8	0	5	3	0	0	copy fasta	SNRPE	chr1	203856599	203876152
SNRPE_chr1_203856599_203876152	0/0	t0006	1283	6	0	1	0	1	4	copy fasta	SNRPE	chr1	203856599	203876152
SNRPE_chr1_203856599_203876152	0/0	t0007	1282	6	0	0	5	0	1	copy fasta	SNRPE	chr1	203856599	203876152
SNRPE_chr1_203856599_203876152	0/0	t0008	1282	5	2	0	0	1	2	copy fasta	SNRPE	chr1	203856599	203876152
SNRPE_chr1_203856599_203876152	0/0	t0009	1282	3	0	1	0	2	0	copy fasta	SNRPE	chr1	203856599	203876152
SNRPE_chr1_203856599_203876152	0/0	t0010	1282	3	3	0	0	0	0	copy fasta	SNRPE	chr1	203856599	203876152
SNRPE_chr1_203856599_203876152	0/0	t0011	1282	2	2	0	0	0	0	copy fasta	SNRPE	chr1	203856599	203876152
SNRPE_chr1_203856599_203876152	0/0	t0012	1282	2	0	0	2	0	0	copy fasta	SNRPE	chr1	203856599	203876152
SNRPE_chr1_203856599_203876152	0/0	t0013	1282	1	1	0	0	0	0	copy fasta	SNRPE	chr1	203856599	203876152
SNRPE_chr1_203856599_203876152	0/0	t0014	1282	1	0	0	1	0	0	copy fasta	SNRPE	chr1	203856599	203876152
SNRPE_chr1_203856599_203876152	0/0	t0015	1282	1	0	0	1	0	0	copy fasta	SNRPE	chr1	203856599	203876152
SNRPE_chr1_203856599_203876152	0/0	t0016	1282	1	0	0	1	0	0	copy fasta	SNRPE	chr1	203856599	203876152
SNRPF_chr12_95853952_95871140	1/1	t0001	192	401	86	66	191	12	44	copy fasta	SNRPF	chr12	95853952	95871140
SNRPF_chr12_95853952_95871140	0/0	t0002	192	28	9	1	17	0	1	copy fasta	SNRPF	chr12	95853952	95871140
SNRPF_chr12_95853952_95871140	0/0	t0003	188	9	1	5	0	2	1	copy fasta	SNRPF	chr12	95853952	95871140
SNRPF_chr12_95853952_95871140	0/0	t0004	192	1	0	0	1	0	0	copy fasta	SNRPF	chr12	95853952	95871140
SNRPF_chr12_95853952_95871140	0/0	t0005	192	1	0	0	1	0	0	copy fasta	SNRPF	chr12	95853952	95871140
SNRPG_chr2_70276362_70298740	0/0	t0001	364	369	95	61	162	9	42	copy fasta	SNRPG	chr2	70276362	70298740
SNRPG_chr2_70276362_70298740	0/0	t0002	364	53	1	7	42	1	2	copy fasta	SNRPG	chr2	70276362	70298740
SNRPG_chr2_70276362_70298740	0/0	t0003	364	2	0	0	2	0	0	copy fasta	SNRPG	chr2	70276362	70298740
SNRPN_chr15_24949987_24983723	0/0	t0001	746	182	62	34	64	8	14	copy fasta	SNRPN	chr15	24949987	24983723
SNRPN_chr15_24949987_24983723	1/1	t0002	746	155	19	33	65	10	26	copy fasta	SNRPN	chr15	24949987	24983723
SNRPN_chr15_24949987_24983723	0/0	t0003	746	3	3	0	0	0	0	copy fasta	SNRPN	chr15	24949987	24983723
SNRPN_chr15_24949987_24983723	0/0	t0004	746	2	2	0	0	0	0	copy fasta	SNRPN	chr15	24949987	24983723
SNRPN_chr15_24949987_24983723	0/0	t0005	746	1	0	1	0	0	0	copy fasta	SNRPN	chr15	24949987	24983723
SNRPN_chr15_24949987_24983723	0/0	t0006	746	1	1	0	0	0	0	copy fasta	SNRPN	chr15	24949987	24983723