JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNRPN_chr15_24949987_24983723	0/0	t0007	746	1	1	0	0	0	0	copy fasta	SNRPN	chr15	24949987	24983723
SNRPN_chr15_24949987_24983723	0/0	t0008	758	1	0	0	1	0	0	copy fasta	SNRPN	chr15	24949987	24983723
SNTA1_chr20_33402957_33448763	1/1	t0001	694	324	82	52	134	16	38	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	t0002	694	18	3	5	8	0	2	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	t0003	694	4	4	0	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	t0004	694	3	1	1	1	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	t0005	694	2	2	0	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	t0006	694	2	2	0	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	t0007	694	1	0	0	1	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTB1_chr8_120530756_120817046	0/0	t0001	3326	94	46	11	27	0	10	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	1/0	t0002	3325	77	5	16	48	1	6	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0003	3326	19	0	2	16	0	1	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0004	3323	13	0	6	0	2	5	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0005	3326	8	7	1	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0006	3326	8	6	2	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0007	3325	7	0	5	1	0	1	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0008	3325	5	0	1	4	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/1	t0009	3323	4	1	0	0	0	2	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0010	3326	3	0	0	0	1	2	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0011	3326	3	3	0	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0012	3325	2	0	0	2	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0013	3325	2	2	0	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0014	3325	2	1	1	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0015	3325	1	0	0	0	0	1	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0016	3325	1	1	0	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0017	3325	1	1	0	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0018	3326	1	0	1	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0019	3326	1	1	0	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0020	3326	1	1	0	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	t0021	3326	1	1	0	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB2_chr16_69182164_69314052	0/0	t0001	8132	40	18	8	11	1	2	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	1/0	t0002	8132	35	1	8	18	2	5	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0003	8132	22	2	7	8	0	5	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0004	8132	17	5	2	5	0	5	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0005	8132	13	5	2	4	1	1	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0006	8132	9	9	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0007	8132	8	0	0	5	0	3	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0008	8132	6	6	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0009	8133	6	5	1	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0010	8132	5	2	2	0	1	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0011	8133	4	4	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0012	8132	4	0	2	1	1	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0013	8133	3	3	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0014	8132	3	2	1	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0015	8132	3	3	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0016	8132	3	3	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0017	8132	2	0	0	0	0	2	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0018	8132	2	0	2	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/1	t0019	8132	2	0	0	0	1	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0020	8132	2	0	1	0	1	0	copy fasta	SNTB2	chr16	69182164	69314052