Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BEX2_chrX_103304346_103315990	0/0	t0010	457	1	0	1	0	0	0	copy fasta	BEX2	chrX	103304346	103315990
BEX3_chrX_103371538_103383164	1/1	t0001	505	295	70	51	133	7	32	copy fasta	BEX3	chrX	103371538	103383164
BEX3_chrX_103371538_103383164	0/0	t0002	504	1	0	0	1	0	0	copy fasta	BEX3	chrX	103371538	103383164
BEX3_chrX_103371538_103383164	0/0	t0003	505	1	0	0	1	0	0	copy fasta	BEX3	chrX	103371538	103383164
BEX3_chrX_103371538_103383164	0/0	t0004	503	1	0	0	1	0	0	copy fasta	BEX3	chrX	103371538	103383164
BEX4_chrX_103210108_103222246	0/0	t0001	950	164	26	29	92	3	14	copy fasta	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	1/1	t0002	950	109	18	28	41	6	14	copy fasta	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	t0003	950	23	0	0	22	0	1	copy fasta	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	t0004	948	18	18	0	0	0	0	copy fasta	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	t0005	952	14	13	1	0	0	0	copy fasta	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	t0006	950	1	0	0	0	0	1	copy fasta	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	t0007	950	1	0	0	0	0	1	copy fasta	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	t0008	950	1	0	1	0	0	0	copy fasta	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	t0009	947	1	1	0	0	0	0	copy fasta	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	t0010	950	1	1	0	0	0	0	copy fasta	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	t0011	948	1	1	0	0	0	0	copy fasta	BEX4	chrX	103210108	103222246
BEX5_chrX_102148712_102160977	1/1	t0001	442	278	60	55	123	10	28	copy fasta	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	t0002	443	22	5	1	16	0	0	copy fasta	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	t0003	441	22	10	1	4	1	6	copy fasta	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	t0004	444	1	1	0	0	0	0	copy fasta	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	t0005	442	1	0	0	1	0	0	copy fasta	BEX5	chrX	102148712	102160977
BFAR_chr16_14627951_14674236	0/1	t0001	1551	269	72	50	98	16	32	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	t0002	1551	20	0	0	19	0	1	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	t0003	1551	10	1	8	0	0	1	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	t0004	1551	5	3	2	0	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	t0005	1552	3	1	0	2	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	t0006	1552	3	3	0	0	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	t0007	1551	2	0	2	0	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	t0008	1551	2	0	0	2	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	t0009	1551	1	1	0	0	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	t0010	1552	1	1	0	0	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	t0011	1551	1	0	0	1	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFSP1_chr20_17488905_17536379	1/1	t0001	220	186	56	34	81	2	11	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	t0002	220	169	23	37	76	8	25	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	t0003	220	21	0	2	15	0	4	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	t0004	220	20	19	1	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP2_chr3_133395056_133480208	1/1	t0001	265	275	82	54	93	10	34	copy fasta	BFSP2	chr3	133395056	133480208
BFSP2_chr3_133395056_133480208	0/0	t0002	265	1	0	0	1	0	0	copy fasta	BFSP2	chr3	133395056	133480208
BGLAP_chr1_156237184_156248317	1/1	t0001	204	398	92	76	162	16	50	copy fasta	BGLAP	chr1	156237184	156248317
BGLAP_chr1_156237184_156248317	0/0	t0002	204	1	0	1	0	0	0	copy fasta	BGLAP	chr1	156237184	156248317
BGLAP_chr1_156237184_156248317	0/0	t0003	204	1	0	1	0	0	0	copy fasta	BGLAP	chr1	156237184	156248317
BGN_chrX_153489980_153514546	0/0	t0001	1243	71	3	9	55	0	4	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0002	1212	22	0	9	8	3	2	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0003	1235	18	0	11	4	0	3	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0004	1247	14	0	6	4	2	2	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0005	1212	14	12	0	1	0	1	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/1	t0006	1241	13	3	8	1	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0007	1210	11	1	0	9	0	1	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0008	1253	9	2	0	6	0	1	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0009	1243	9	0	0	6	0	3	copy fasta	BGN	chrX	153489980	153514546