JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNTB2_chr16_69182164_69314052	0/0	t0021	8133	2	2	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0022	8125	2	0	0	2	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0023	8132	2	2	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0024	8132	1	1	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0025	8133	1	1	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0026	8132	1	1	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0027	8132	1	1	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0028	8132	1	0	1	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0029	8133	1	0	1	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0030	8132	1	0	0	0	0	1	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0031	8131	1	1	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0032	8132	1	1	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0033	8132	1	1	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0034	8133	1	1	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0035	8132	1	0	0	1	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0036	8132	1	1	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0037	8133	1	0	0	0	0	1	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0038	8132	1	1	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0039	8132	1	1	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0040	8132	1	0	0	1	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0041	8132	1	0	0	1	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0042	8132	1	0	0	1	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0043	8132	1	0	0	0	0	1	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0044	8132	1	0	0	0	0	1	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0045	8132	1	0	0	0	0	1	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	t0046	8132	1	1	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTG1_chr8_49906407_50801692	0/0	t0001	4792	13	3	2	6	0	2	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0002	4789	9	5	0	1	1	2	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0003	4791	8	3	3	1	0	1	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0004	4790	7	2	0	3	1	1	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0005	4791	7	2	0	3	0	2	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0006	4791	5	3	1	0	0	1	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0007	4791	4	4	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0008	4792	3	1	1	0	0	1	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0009	4790	3	2	0	0	0	1	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0010	4789	3	2	0	0	0	1	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0011	4792	2	2	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0012	4789	2	1	1	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0013	4791	2	1	1	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0014	4791	2	2	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0015	4792	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0016	4792	1	0	1	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0017	4792	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0018	4792	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0019	4792	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0020	4792	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0021	4790	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0022	4790	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0023	4792	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0024	4790	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692