JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNTG1_chr8_49906407_50801692	0/0	t0025	4790	1	0	0	0	0	1	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0026	4790	1	0	0	1	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0027	4790	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0028	4790	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0029	4792	1	0	1	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0030	4791	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0031	4791	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0032	4789	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0033	4789	1	0	1	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0034	4791	1	0	1	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0035	4791	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0036	4791	1	0	0	0	0	1	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0037	4791	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0038	4791	1	0	0	0	0	1	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0039	4791	1	0	1	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0040	4789	1	0	0	1	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0041	4791	1	0	0	0	0	1	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0042	4788	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0043	4790	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0044	4790	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0045	4790	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0046	4790	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0047	4790	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0048	4790	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0049	4790	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	t0050	4791	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG2_chr2_945849_1372613	1/1	t0001	288	179	55	41	38	14	29	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	t0002	288	9	9	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	t0003	288	1	0	1	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	t0004	288	1	0	0	0	0	1	copy fasta	SNTG2	chr2	945849	1372613
SNTN_chr3_63647675_63670212	1/0	t0001	1131	134	20	25	72	5	11	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0002	1131	66	0	8	42	1	15	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/1	t0003	1136	61	11	11	28	4	6	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0004	1141	43	5	7	26	0	5	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0005	1126	37	17	8	11	1	0	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0006	1126	22	18	4	0	0	0	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0007	1126	13	0	0	13	0	0	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0008	1131	11	0	0	11	0	0	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0009	1131	10	3	4	0	2	1	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0010	1127	9	9	0	0	0	0	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0011	1141	8	5	2	0	0	1	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0012	1146	7	0	0	6	0	1	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0013	1136	5	0	0	4	0	1	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0014	1141	4	1	3	0	0	0	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0015	1131	4	0	0	4	0	0	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0016	1131	4	3	0	0	0	1	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0017	1142	2	0	0	0	2	0	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0018	1136	2	1	0	1	0	0	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0019	1127	1	1	0	0	0	0	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0020	1131	1	0	0	0	1	0	copy fasta	SNTN	chr3	63647675	63670212