JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNTN_chr3_63647675_63670212	0/0	t0021	1132	1	0	0	1	0	0	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0022	1131	1	0	0	0	0	1	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0023	1137	1	1	0	0	0	0	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0024	1131	1	0	0	0	0	1	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0025	1116	1	1	0	0	0	0	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	t0026	1136	1	0	0	1	0	0	copy fasta	SNTN	chr3	63647675	63670212
SNU13_chr22_41668933_41693867	0/1	t0001	1072	208	68	24	97	5	13	copy fasta	SNU13	chr22	41668933	41693867
SNU13_chr22_41668933_41693867	0/0	t0002	1072	74	2	13	40	5	14	copy fasta	SNU13	chr22	41668933	41693867
SNU13_chr22_41668933_41693867	1/0	t0003	1072	68	2	30	17	3	15	copy fasta	SNU13	chr22	41668933	41693867
SNU13_chr22_41668933_41693867	0/0	t0004	1072	10	7	3	0	0	0	copy fasta	SNU13	chr22	41668933	41693867
SNU13_chr22_41668933_41693867	0/0	t0005	1072	6	6	0	0	0	0	copy fasta	SNU13	chr22	41668933	41693867
SNU13_chr22_41668933_41693867	0/0	t0006	1072	5	0	2	0	3	0	copy fasta	SNU13	chr22	41668933	41693867
SNU13_chr22_41668933_41693867	0/0	t0007	1072	2	0	0	0	0	2	copy fasta	SNU13	chr22	41668933	41693867
SNU13_chr22_41668933_41693867	0/0	t0008	1072	1	1	0	0	0	0	copy fasta	SNU13	chr22	41668933	41693867
SNU13_chr22_41668933_41693867	0/0	t0009	1072	1	1	0	0	0	0	copy fasta	SNU13	chr22	41668933	41693867
SNU13_chr22_41668933_41693867	0/0	t0010	1072	1	1	0	0	0	0	copy fasta	SNU13	chr22	41668933	41693867
SNUPN_chr15_75593086_75630725	1/1	t0001	338	320	72	58	149	9	30	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	t0002	338	20	5	8	2	3	2	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	t0003	338	2	2	0	0	0	0	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	t0004	338	1	0	0	1	0	0	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	t0005	338	1	1	0	0	0	0	copy fasta	SNUPN	chr15	75593086	75630725
SNURF_chr15_24949987_24973821	1/1	t0001	847	368	79	70	158	18	41	copy fasta	SNURF	chr15	24949987	24973821
SNURF_chr15_24949987_24973821	0/0	t0002	847	6	5	1	0	0	0	copy fasta	SNURF	chr15	24949987	24973821
SNURF_chr15_24949987_24973821	0/0	t0003	847	4	4	0	0	0	0	copy fasta	SNURF	chr15	24949987	24973821
SNURF_chr15_24949987_24973821	0/0	t0004	847	3	0	0	0	0	3	copy fasta	SNURF	chr15	24949987	24973821
SNURF_chr15_24949987_24973821	0/0	t0005	847	1	0	1	0	0	0	copy fasta	SNURF	chr15	24949987	24973821
SNURF_chr15_24949987_24973821	0/0	t0006	847	1	0	0	1	0	0	copy fasta	SNURF	chr15	24949987	24973821
SNURF_chr15_24949987_24973821	0/0	t0007	847	1	1	0	0	0	0	copy fasta	SNURF	chr15	24949987	24973821
SNURF_chr15_24949987_24973821	0/0	t0008	847	1	1	0	0	0	0	copy fasta	SNURF	chr15	24949987	24973821
SNURF_chr15_24949987_24973821	0/0	t0009	847	1	0	0	1	0	0	copy fasta	SNURF	chr15	24949987	24973821
SNW1_chr14_77712599_77766156	1/1	t0001	519	333	84	52	147	16	32	copy fasta	SNW1	chr14	77712599	77766156
SNW1_chr14_77712599_77766156	0/0	t0002	520	27	5	10	7	2	3	copy fasta	SNW1	chr14	77712599	77766156
SNW1_chr14_77712599_77766156	0/0	t0003	518	3	3	0	0	0	0	copy fasta	SNW1	chr14	77712599	77766156
SNW1_chr14_77712599_77766156	0/0	t0004	519	1	1	0	0	0	0	copy fasta	SNW1	chr14	77712599	77766156
SNW1_chr14_77712599_77766156	0/0	t0005	519	1	0	0	0	0	1	copy fasta	SNW1	chr14	77712599	77766156
SNW1_chr14_77712599_77766156	0/0	t0006	519	1	1	0	0	0	0	copy fasta	SNW1	chr14	77712599	77766156
SNX10_chr7_26286862_26379383	1/1	t0001	2060	217	59	35	72	14	35	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0002	2060	42	4	15	18	2	3	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0003	2060	25	9	0	14	0	2	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0004	2060	22	4	0	18	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0005	2069	14	0	3	11	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0006	2087	9	1	1	7	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0007	2078	7	0	2	4	0	1	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0008	2060	6	1	3	2	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0009	2069	5	1	0	3	0	1	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0010	2096	4	0	1	3	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0011	2087	4	1	0	2	0	1	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0012	2051	3	2	0	1	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0013	2060	2	2	0	0	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0014	2060	2	2	0	0	0	0	copy fasta	SNX10	chr7	26286862	26379383