JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX10_chr7_26286862_26379383	0/0	t0015	2096	2	0	0	2	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0016	2078	2	0	1	1	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0017	2060	2	0	2	0	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0018	2060	1	1	0	0	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0019	2114	1	0	0	1	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0020	2105	1	0	0	1	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0021	2105	1	0	0	1	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0022	2105	1	0	0	1	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0023	2096	1	0	0	1	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0024	2106	1	0	0	1	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0025	2078	1	0	0	1	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0026	2078	1	0	0	1	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0027	2078	1	1	0	0	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0028	2069	1	0	0	1	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0029	2088	1	1	0	0	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0030	2088	1	0	0	1	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0031	2060	1	0	0	1	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0032	2060	1	1	0	0	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0033	2060	1	1	0	0	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0034	2060	1	0	1	0	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0035	2060	1	0	1	0	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0036	2060	1	1	0	0	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0037	2060	1	0	1	0	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0038	2060	1	0	0	1	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	t0039	2042	1	0	0	0	0	1	copy fasta	SNX10	chr7	26286862	26379383
SNX11_chr17_48102766_48128601	0/1	t0001	2180	264	31	47	147	10	28	copy fasta	SNX11	chr17	48102766	48128601
SNX11_chr17_48102766_48128601	1/0	t0002	2180	106	42	13	36	5	9	copy fasta	SNX11	chr17	48102766	48128601
SNX11_chr17_48102766_48128601	0/0	t0003	2181	30	14	5	5	3	3	copy fasta	SNX11	chr17	48102766	48128601
SNX11_chr17_48102766_48128601	0/0	t0004	2180	4	0	0	4	0	0	copy fasta	SNX11	chr17	48102766	48128601
SNX11_chr17_48102766_48128601	0/0	t0005	2181	3	0	3	0	0	0	copy fasta	SNX11	chr17	48102766	48128601
SNX11_chr17_48102766_48128601	0/0	t0006	2180	2	2	0	0	0	0	copy fasta	SNX11	chr17	48102766	48128601
SNX11_chr17_48102766_48128601	0/0	t0007	2180	2	0	2	0	0	0	copy fasta	SNX11	chr17	48102766	48128601
SNX11_chr17_48102766_48128601	0/0	t0008	2180	1	0	0	1	0	0	copy fasta	SNX11	chr17	48102766	48128601
SNX11_chr17_48102766_48128601	0/0	t0009	2180	1	0	0	1	0	0	copy fasta	SNX11	chr17	48102766	48128601
SNX11_chr17_48102766_48128601	0/0	t0010	2180	1	1	0	0	0	0	copy fasta	SNX11	chr17	48102766	48128601
SNX11_chr17_48102766_48128601	0/0	t0011	2180	1	1	0	0	0	0	copy fasta	SNX11	chr17	48102766	48128601
SNX11_chr17_48102766_48128601	0/0	t0012	2180	1	1	0	0	0	0	copy fasta	SNX11	chr17	48102766	48128601
SNX12_chrX_71054247_71073334	0/1	t0001	1798	152	56	36	42	5	12	copy fasta	SNX12	chrX	71054247	71073334
SNX12_chrX_71054247_71073334	1/0	t0002	1798	122	8	19	77	3	14	copy fasta	SNX12	chrX	71054247	71073334
SNX12_chrX_71054247_71073334	0/0	t0003	1798	16	5	2	8	0	1	copy fasta	SNX12	chrX	71054247	71073334
SNX12_chrX_71054247_71073334	0/0	t0004	1798	5	0	3	0	1	1	copy fasta	SNX12	chrX	71054247	71073334
SNX12_chrX_71054247_71073334	0/0	t0005	1798	3	3	0	0	0	0	copy fasta	SNX12	chrX	71054247	71073334
SNX12_chrX_71054247_71073334	0/0	t0006	1798	2	0	2	0	0	0	copy fasta	SNX12	chrX	71054247	71073334
SNX12_chrX_71054247_71073334	0/0	t0007	1802	1	0	0	1	0	0	copy fasta	SNX12	chrX	71054247	71073334
SNX12_chrX_71054247_71073334	0/0	t0008	1798	1	0	0	0	0	1	copy fasta	SNX12	chrX	71054247	71073334
SNX12_chrX_71054247_71073334	0/0	t0009	1798	1	1	0	0	0	0	copy fasta	SNX12	chrX	71054247	71073334
SNX12_chrX_71054247_71073334	0/0	t0010	1798	1	1	0	0	0	0	copy fasta	SNX12	chrX	71054247	71073334
SNX12_chrX_71054247_71073334	0/0	t0011	1798	1	0	0	1	0	0	copy fasta	SNX12	chrX	71054247	71073334
SNX12_chrX_71054247_71073334	0/0	t0012	1798	1	0	0	1	0	0	copy fasta	SNX12	chrX	71054247	71073334
SNX12_chrX_71054247_71073334	0/0	t0013	1799	1	0	0	1	0	0	copy fasta	SNX12	chrX	71054247	71073334