JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX12_chrX_71054247_71073334	0/0	t0014	1798	1	0	0	0	0	1	copy fasta	SNX12	chrX	71054247	71073334
SNX12_chrX_71054247_71073334	0/0	t0015	1799	1	0	0	1	0	0	copy fasta	SNX12	chrX	71054247	71073334
SNX13_chr7_17785761_17945494	0/1	t0001	3484	192	41	33	85	10	22	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	1/0	t0002	3484	53	7	15	18	3	9	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0003	3484	14	0	0	14	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0004	3484	12	0	2	7	0	3	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0005	3484	9	3	2	3	0	1	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0006	3484	7	1	6	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0007	3484	7	0	0	6	1	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0008	3484	6	5	1	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0009	3484	5	0	1	4	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0010	3483	3	3	0	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0011	3484	3	3	0	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0012	3484	3	3	0	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0013	3484	2	0	2	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0014	3484	2	1	1	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0015	3484	2	0	0	2	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0016	3484	2	0	0	2	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0017	3484	1	0	0	1	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0018	3484	1	0	1	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0019	3484	1	0	1	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0020	3484	1	1	0	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0021	3484	1	1	0	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0022	3484	1	0	1	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0023	3484	1	1	0	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0024	3484	1	0	1	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0025	3484	1	1	0	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0026	3484	1	0	0	0	0	1	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0027	3484	1	0	0	1	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0028	3484	1	0	0	1	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0029	3484	1	0	1	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0030	3484	1	1	0	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0031	3484	1	1	0	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	t0032	3484	1	1	0	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX14_chr6_85500496_85598858	1/1	t0001	612	350	83	58	161	12	34	copy fasta	SNX14	chr6	85500496	85598858
SNX14_chr6_85500496_85598858	0/0	t0002	612	4	4	0	0	0	0	copy fasta	SNX14	chr6	85500496	85598858
SNX14_chr6_85500496_85598858	0/0	t0003	612	2	0	0	2	0	0	copy fasta	SNX14	chr6	85500496	85598858
SNX14_chr6_85500496_85598858	0/0	t0004	612	1	1	0	0	0	0	copy fasta	SNX14	chr6	85500496	85598858
SNX14_chr6_85500496_85598858	0/0	t0005	612	1	1	0	0	0	0	copy fasta	SNX14	chr6	85500496	85598858
SNX14_chr6_85500496_85598858	0/0	t0006	612	1	1	0	0	0	0	copy fasta	SNX14	chr6	85500496	85598858
SNX14_chr6_85500496_85598858	0/0	t0007	612	1	0	0	1	0	0	copy fasta	SNX14	chr6	85500496	85598858
SNX15_chr11_65022439_65045572	0/0	t0001	880	127	22	16	71	4	14	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/1	t0002	881	96	17	28	33	9	8	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	t0003	881	68	30	11	15	1	11	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	t0004	881	31	25	1	4	0	1	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	t0005	880	5	0	3	2	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	t0006	880	2	0	0	2	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	t0007	880	2	2	0	0	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	1/0	t0008	880	1	0	0	0	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	t0009	880	1	0	0	1	0	0	copy fasta	SNX15	chr11	65022439	65045572