JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX15_chr11_65022439_65045572	0/0	t0010	880	1	1	0	0	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	t0011	881	1	0	1	0	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	t0012	881	1	1	0	0	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	t0013	881	1	1	0	0	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	t0014	881	1	1	0	0	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX16_chr8_81794583_81847185	0/0	t0001	2077	77	41	18	3	4	11	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/1	t0002	2075	69	4	17	34	1	12	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	t0003	2077	67	2	18	32	3	12	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	t0004	2077	45	5	10	23	1	6	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	t0005	2077	15	5	5	0	1	4	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	t0006	2077	14	13	1	0	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	t0007	2077	7	7	0	0	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	t0008	2077	2	2	0	0	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	t0009	2077	2	2	0	0	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	1/0	t0010	2075	1	0	0	0	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	t0011	2077	1	0	0	1	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	t0012	2077	1	1	0	0	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	t0013	2075	1	0	0	1	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	t0014	2077	1	0	1	0	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	t0015	2075	1	0	0	1	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	t0016	2075	1	0	0	1	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	t0017	2075	1	0	0	0	0	1	copy fasta	SNX16	chr8	81794583	81847185
SNX17_chr2_27365616_27382535	1/0	t0001	945	223	19	34	137	9	23	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/1	t0002	945	100	22	30	25	5	17	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	t0003	945	38	32	5	0	0	1	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	t0004	945	2	2	0	0	0	0	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	t0005	945	2	2	0	0	0	0	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	t0006	945	2	2	0	0	0	0	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	t0007	945	1	0	0	0	0	1	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	t0008	929	1	0	0	0	0	1	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	t0009	945	1	0	1	0	0	0	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	t0010	945	1	1	0	0	0	0	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	t0011	945	1	0	0	0	0	1	copy fasta	SNX17	chr2	27365616	27382535
SNX18_chr5_54512759_54551586	0/0	t0001	3346	116	22	14	76	0	4	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	1/0	t0002	3349	86	18	16	39	2	10	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0003	3350	25	2	6	12	0	5	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/1	t0004	3350	22	1	9	4	3	4	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0005	3350	20	0	4	8	2	6	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0006	3350	12	10	1	0	1	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0007	3348	9	2	1	3	1	2	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0008	3347	9	1	2	5	0	1	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0009	3345	6	6	0	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0010	3348	6	6	0	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0011	3351	5	0	1	0	2	2	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0012	3348	5	2	1	0	1	1	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0013	3350	5	0	3	0	2	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0014	3348	4	4	0	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0015	3351	4	0	0	3	0	1	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0016	3346	4	0	4	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0017	3346	3	0	1	2	0	0	copy fasta	SNX18	chr5	54512759	54551586