JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX18_chr5_54512759_54551586	0/0	t0018	3349	3	2	1	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0019	3349	3	2	0	0	1	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0020	3352	3	0	0	1	0	2	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0021	3351	3	0	0	3	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0022	3346	3	0	0	3	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0023	3349	2	2	0	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0024	3349	2	0	0	2	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0025	3346	2	0	0	2	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0026	3346	2	1	1	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0027	3350	2	0	0	2	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0028	3350	2	0	2	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0029	3351	2	0	1	0	0	1	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0030	3347	1	1	0	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0031	3348	1	1	0	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0032	3349	1	0	0	0	1	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0033	3348	1	1	0	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0034	3349	1	0	0	1	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0035	3349	1	0	1	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0036	3349	1	0	0	1	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0037	3349	1	1	0	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0038	3346	1	0	0	0	0	1	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0039	3346	1	0	0	0	0	1	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0040	3345	1	0	0	1	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0041	3351	1	0	1	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0042	3350	1	0	0	0	0	1	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0043	3347	1	0	0	0	0	1	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0044	3348	1	0	0	1	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0045	3346	1	0	0	0	0	1	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0046	3350	1	0	1	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0047	3348	1	0	0	1	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0048	3348	1	1	0	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	t0049	3350	1	0	1	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX19_chr11_130861250_130921479	0/0	t0001	12713	75	2	18	37	5	13	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	1/0	t0002	12713	50	0	15	30	2	2	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0003	12709	27	5	4	16	1	1	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0004	12709	22	0	1	20	0	1	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0005	12713	15	0	0	15	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0006	12714	14	0	1	3	1	9	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0007	12709	13	4	3	3	0	3	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0008	12713	10	8	1	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0009	12709	7	5	2	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0010	12713	5	4	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0011	12712	5	3	2	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0012	12713	4	0	2	0	1	1	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0013	12709	4	0	0	4	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0014	12713	4	0	0	4	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0015	12714	4	0	0	4	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/1	t0016	12713	4	0	2	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0017	12713	4	0	0	4	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0018	12713	4	3	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479