JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SNX19_chr11_130861250_130921479	0/0	t0069	12711	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0070	12714	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0071	12709	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0072	12709	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0073	12710	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0074	12714	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0075	12713	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0076	12709	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0077	12711	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0078	12713	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0079	12713	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0080	12714	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0081	12713	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0082	12713	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0083	12713	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0084	12714	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0085	13045	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0086	12714	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0087	12713	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0088	12714	1	0	0	0	1	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0089	12714	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0090	12715	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0091	12714	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0092	12715	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0093	12713	1	0	0	0	1	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0094	12713	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0095	12713	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0096	12713	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0097	12713	1	0	1	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0098	12713	1	0	1	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0099	12713	1	0	0	0	1	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0100	12713	1	0	1	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0101	12714	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0102	12714	1	0	0	0	1	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0103	12714	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0104	12713	1	0	0	0	1	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0105	12713	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0106	12713	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0107	12713	1	0	0	0	1	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0108	12714	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0109	12709	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0110	12713	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0111	12713	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0112	12713	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0113	12710	1	0	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0114	12712	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0115	12714	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0116	12714	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0117	12714	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	t0118	12712	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479