JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX1_chr15_64090982_64149231	0/0	t0001	6656	29	0	6	16	1	6	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0002	6652	21	1	7	7	3	3	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0003	6654	13	0	4	5	2	2	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0004	6660	12	0	4	6	1	1	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/1	t0005	6658	10	1	0	3	1	4	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0006	6662	8	2	0	5	0	1	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0007	6655	6	0	0	5	0	1	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0008	6650	6	0	0	4	1	1	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0009	6646	6	0	1	5	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0010	6664	6	0	0	4	1	1	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0011	6648	6	1	3	2	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0012	6622	6	6	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0013	6655	5	5	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0014	6651	5	1	4	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0015	6657	5	5	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0016	6659	4	4	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0017	6659	4	0	0	4	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0018	6666	4	1	0	1	0	2	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0019	6644	4	0	0	2	0	2	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0020	6653	4	4	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0021	6657	4	4	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0022	6626	4	2	2	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0023	6651	3	1	0	2	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	1/0	t0024	6646	3	2	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0025	6665	3	3	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0026	6653	3	1	2	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0027	6648	3	3	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0028	6655	2	0	1	0	0	1	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0029	6651	2	0	0	0	1	1	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0030	6670	2	0	0	2	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0031	6670	2	0	0	0	0	2	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0032	6651	2	2	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0033	6659	2	2	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0034	6651	2	1	1	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0035	6659	2	0	2	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0036	6665	2	2	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0037	6618	2	2	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0038	6648	2	2	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0039	6652	2	2	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0040	6659	1	0	1	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0041	6659	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0042	6655	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0043	6651	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0044	6651	1	0	0	1	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0045	6654	1	0	0	1	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0046	6650	1	0	0	1	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0047	6671	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0048	6667	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0049	6663	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0050	6663	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231