JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX1_chr15_64090982_64149231	0/0	t0051	6655	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0052	6647	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0053	6666	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0054	6666	1	0	1	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0055	6662	1	0	1	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0056	6658	1	0	1	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0057	6654	1	0	1	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0058	6651	1	0	0	0	1	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0059	6658	1	0	0	1	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0060	6654	1	0	1	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0061	6659	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0062	6647	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0063	6659	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0064	6651	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0065	6664	1	0	0	1	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0066	6656	1	0	0	0	0	1	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0067	6656	1	0	0	1	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0068	6652	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0069	6648	1	0	0	1	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0070	6664	1	0	0	1	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0071	6652	1	0	0	1	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0072	6656	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0073	6652	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0074	6667	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0075	6663	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0076	6659	1	0	0	0	0	1	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0077	6659	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0078	6656	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0079	6652	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0080	6659	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0081	6662	1	0	0	1	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0082	6658	1	0	0	1	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0083	6654	1	0	0	1	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0084	6646	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0085	6661	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0086	6653	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0087	6645	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0088	6673	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0089	6661	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0090	6656	1	0	0	1	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0091	6652	1	0	1	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0092	6643	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0093	6652	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0094	6656	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0095	6651	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0096	6648	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0097	6644	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	t0098	6640	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX20_chr16_50666629_50686312	1/0	t0001	1910	143	10	27	92	0	13	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0002	1912	57	10	17	20	1	9	copy fasta	SNX20	chr16	50666629	50686312