JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX20_chr16_50666629_50686312	0/0	t0003	1910	28	7	11	0	2	8	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0004	1914	19	2	2	11	2	2	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0005	1908	18	0	4	8	1	5	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/1	t0006	1908	17	0	7	0	8	1	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0007	1916	16	0	1	14	1	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0008	1914	11	0	1	10	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0009	1912	10	7	1	0	1	1	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0010	1918	6	6	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0011	1916	6	2	2	2	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0012	1912	6	3	1	2	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0013	1902	6	0	2	4	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0014	1910	5	5	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0015	1918	4	0	0	4	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0016	1908	4	4	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0017	1919	3	3	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0018	1917	3	3	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0019	1915	3	3	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0020	1913	3	3	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0021	1916	3	3	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0022	1914	3	3	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0023	1892	3	3	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0024	1921	2	2	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0025	1918	2	1	0	0	0	1	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0026	1908	2	0	1	0	1	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0027	1906	2	0	1	1	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0028	1906	2	2	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0029	1904	2	0	1	0	0	1	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0030	1906	2	1	1	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0031	1918	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0032	1910	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0033	1913	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0034	1909	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0035	1911	1	0	1	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0036	1919	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0037	1914	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0038	1912	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0039	1908	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0040	1922	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0041	1920	1	0	1	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0042	1912	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0043	1912	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0044	1912	1	0	1	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0045	1910	1	0	0	0	0	1	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0046	1910	1	0	0	0	0	1	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0047	1908	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0048	1910	1	0	0	0	0	1	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0049	1913	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0050	1916	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0051	1911	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0052	1908	1	0	1	0	0	0	copy fasta	SNX20	chr16	50666629	50686312