JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX20_chr16_50666629_50686312	0/0	t0053	1922	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0054	1914	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	t0055	1904	1	0	0	0	1	0	copy fasta	SNX20	chr16	50666629	50686312
SNX21_chr20_45828799_45848276	0/1	t0001	2085	160	26	34	77	6	16	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	1/0	t0002	2085	114	21	16	53	9	14	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0003	2085	36	0	3	33	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0004	2085	17	0	0	16	0	1	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0005	2084	14	13	1	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0006	2085	10	0	10	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0007	2076	10	9	1	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0008	2076	8	7	1	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0009	2085	8	1	6	0	1	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0010	2085	8	0	0	3	1	4	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0011	2085	6	0	0	6	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0012	2085	5	5	0	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0013	2085	4	4	0	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0014	2085	4	0	0	4	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0015	2085	3	3	0	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0016	2085	2	2	0	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0017	2085	2	0	0	2	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0018	2084	2	1	1	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0019	2085	2	0	0	0	0	2	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0020	2085	1	0	0	1	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0021	2085	1	0	0	1	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0022	2076	1	1	0	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0023	2085	1	0	0	0	1	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0024	2085	1	0	0	0	0	1	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0025	2085	1	0	0	1	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0026	2085	1	1	0	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0027	2072	1	0	0	1	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0028	2085	1	0	0	1	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0029	2105	1	0	0	0	0	1	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0030	2085	1	0	1	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0031	2085	1	1	0	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0032	2085	1	1	0	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0033	2084	1	1	0	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0034	2076	1	1	0	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0035	2085	1	0	0	1	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	t0036	2085	1	0	0	0	0	1	copy fasta	SNX21	chr20	45828799	45848276
SNX22_chr15_64146731_64162481	0/0	t0001	3012	97	3	17	63	4	10	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0002	3020	34	9	6	11	3	5	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	1/1	t0003	3019	28	6	1	8	0	11	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0004	3018	16	11	5	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0005	3021	11	0	1	8	1	1	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0006	3012	10	0	6	0	3	1	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0007	3017	10	9	1	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0008	3020	10	4	1	1	0	4	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0009	3021	7	4	3	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0010	3017	6	6	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0011	3012	5	4	1	0	0	0	copy fasta	SNX22	chr15	64146731	64162481