JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX22_chr15_64146731_64162481	0/0	t0012	3021	5	5	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0013	3013	5	0	0	3	0	2	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0014	3013	5	0	3	2	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0015	3012	4	0	0	4	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0016	3018	4	0	0	0	1	3	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0017	3019	4	2	1	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0018	3019	4	3	1	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0019	3020	4	3	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0020	3018	3	3	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0021	3020	3	2	0	0	0	1	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0022	3019	3	3	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0023	3020	3	0	0	0	2	1	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0024	3012	3	0	3	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0025	3019	3	3	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0026	3017	2	2	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0027	3017	2	2	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0028	3019	2	2	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0029	3019	2	0	0	2	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0030	3011	2	0	0	2	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0031	3020	2	0	1	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0032	3020	2	0	0	2	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0033	3012	2	0	0	2	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0034	3013	2	0	0	0	0	2	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0035	3012	2	0	0	2	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0036	3011	2	0	0	0	0	2	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0037	3021	1	1	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0038	3013	1	0	1	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0039	3019	1	0	1	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0040	3018	1	0	0	0	0	1	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0041	3019	1	0	1	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0042	3006	1	0	0	0	0	1	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0043	3018	1	1	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0044	3018	1	1	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0045	3011	1	1	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0046	3021	1	1	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0047	3020	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0048	3019	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0049	3019	1	1	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0050	3018	1	1	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0051	3018	1	1	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0052	3018	1	1	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0053	3018	1	0	1	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0054	3019	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0055	3019	1	1	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0056	3019	1	0	0	0	0	1	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0057	3019	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0058	3019	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0059	3020	1	1	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0060	3021	1	1	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0061	3021	1	0	0	0	1	0	copy fasta	SNX22	chr15	64146731	64162481