JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX22_chr15_64146731_64162481	0/0	t0062	3011	1	0	1	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0063	3022	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0064	3021	1	0	1	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0065	3019	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0066	3020	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0067	3018	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0068	3014	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0069	3013	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0070	3012	1	0	1	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0071	3012	1	0	1	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0072	3012	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0073	3012	1	0	0	0	1	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0074	3022	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0075	3014	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0076	3014	1	0	1	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	t0077	3012	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX24_chr5_122840613_123014205	0/1	t0001	1479	138	39	29	50	6	13	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	1/0	t0002	1478	129	17	24	74	3	10	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0003	1478	19	2	7	2	3	5	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0004	1480	15	10	0	3	0	2	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0005	1477	5	1	1	3	0	0	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0006	1479	5	3	0	0	2	0	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0007	1479	2	0	0	2	0	0	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0008	1478	2	2	0	0	0	0	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0009	1478	2	2	0	0	0	0	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0010	1478	2	2	0	0	0	0	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0011	1477	2	0	2	0	0	0	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0012	1463	1	0	0	1	0	0	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0013	1479	1	0	0	1	0	0	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0014	1479	1	1	0	0	0	0	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0015	1479	1	0	1	0	0	0	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0016	1480	1	1	0	0	0	0	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0017	1479	1	1	0	0	0	0	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0018	1478	1	1	0	0	0	0	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0019	1478	1	1	0	0	0	0	copy fasta	SNX24	chr5	122840613	123014205
SNX24_chr5_122840613_123014205	0/0	t0020	1479	1	1	0	0	0	0	copy fasta	SNX24	chr5	122840613	123014205
SNX25_chr4_185204598_185368966	1/1	t0001	731	263	84	51	90	12	24	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	t0002	731	9	0	3	6	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	t0003	731	1	0	1	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	t0004	731	1	1	0	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	t0005	731	1	1	0	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	t0006	731	1	0	1	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX27_chr1_151607050_151704080	0/0	t0001	4808	14	0	0	13	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0002	4821	13	0	0	13	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0003	4808	11	2	3	1	1	4	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	1/0	t0004	4816	11	3	3	0	2	2	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0005	4812	8	1	2	2	0	3	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0006	4819	8	0	0	8	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0007	4823	7	1	3	2	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0008	4826	7	0	2	3	0	2	copy fasta	SNX27	chr1	151607050	151704080