JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX27_chr1_151607050_151704080	0/0	t0009	4827	6	2	0	2	1	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0010	4819	6	2	3	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0011	4824	6	1	2	3	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0012	4823	5	5	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0013	4808	5	0	0	5	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0014	4835	5	1	1	1	2	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0015	4817	5	0	1	4	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0016	4809	5	2	2	0	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0017	4813	5	0	2	2	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0018	4817	5	1	0	3	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0019	4820	5	3	0	2	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0020	4822	5	0	1	4	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0021	4813	4	0	1	3	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0022	4824	4	2	0	2	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0023	4828	4	4	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0024	4812	3	3	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0025	4796	3	0	3	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0026	4812	3	0	0	3	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0027	4812	3	0	2	0	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0028	4820	3	1	0	1	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0029	4835	3	0	1	1	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0030	4831	3	0	1	2	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0031	4829	3	0	0	3	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0032	4825	3	0	1	1	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0033	4824	3	0	0	1	0	2	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0034	4828	3	0	1	2	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0035	4806	3	3	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0036	4830	3	0	0	2	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0037	4826	3	0	0	3	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0038	4828	2	2	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0039	4820	2	2	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0040	4832	2	0	0	2	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0041	4808	2	0	2	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0042	4809	2	0	0	1	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0043	4812	2	0	0	2	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0044	4836	2	0	0	2	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0045	4808	2	2	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0046	4812	2	0	2	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0047	4816	2	0	2	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0048	4827	2	0	0	2	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0049	4836	2	0	0	2	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0050	4828	2	0	0	2	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0051	4843	2	0	0	1	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0052	4844	2	0	0	2	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0053	4839	2	0	1	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0054	4824	2	2	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0055	4809	2	0	0	1	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0056	4809	2	0	0	2	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0057	4805	2	1	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0058	4833	2	0	0	2	0	0	copy fasta	SNX27	chr1	151607050	151704080